Results for "BBTools"
Blogs
BBTools for bioinformatician !
....sh in=seq.fq.gz sanger fastq gz interleaved 150bp --------------------------------------------------kcompress.shNewest member of BBTools. Identify constituent k-mers....2261 days ago
Bookmarks
- ...orm CalcUniqueness Clumpify Dedupe Reformat Repair Seal Split Nextera Statistics Tadpole Taxonomy https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/
2327 days ago
- ...most BBMap suite programs and depending on the file extension the input/output format is automatically chosen/set.Note: For most programs in BBTools, you can add the parameter "c...
2281 days ago
Top-level pages
- Reformat is a member of the BBMap/BBTools package. It is a multipurpose tool designed for converting reads o...t\ jgi.ReformatReads in=x.fq out=y.fa Reformat can be downloaded with BBTools here: https://sourceforge.net...
2704 days ago
Bio-Scripts
- # make reference for randomreads.sh # randomreads.sh part of BBTools/BBMap https://sourceforge.net/projects...2>&1 # interleave the paired-end reads # reformat.sh part of BBTools/BBMap https://sourceforge.net...
918 days ago
Bash script to simulate a genome !
...ty rate, max indels=20bp # mutate.sh part of BBTools/BBMap https://sourceforge.net...for randomreads.sh # randomreads.sh part of BBTools/BBMap https://sourceforge.net...e the paired-end reads # reformat.sh part of BBTools/BBMap https://sourceforge.net...908 days ago
Tags
- The guides describe the function, syntax, and typical use-cases of the tools; for a complete list of parameters, run the tool’s shellscript or open it with a text editor. Most tools do not currently have a guide, but each has shellscripts with basic usage information. The “General Usa...
Tags: BBTools, User, Guide
2327 days ago
