Results for "BBmap"

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  • BBMap help

    BBMAP • a solution for everything That content has been reformatted and it is being expanded to include more information. There are common options for most BBMap suite programs and depending on the file extension the input/output format is automatically chosen/set. Using BBMap M...

    Tags: Bioinformatics, BBMap, Help, NGS

    497 days ago

  • BBTools for bioinformatician !

    BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken into 6kbp pieces and mapped independently. Code: $ mapPacBio.sh -Xmx20g k=7 in=reads.fastq ref=reference.fa maxlen=1000 minlen=200 idtag ow int=f qin=33 out=mapped1.sam minratio=0.15...

    Tags: BBMap, Map, NGS, Reads, Sam, Bam, Contamination, Filtration

    4 days ago

  • Convert interleaved to separate files with BBmap. $ reformat.sh in=reads.fq out1=reads_r1.fq out2=reads_r2.fq #interleave #fastq #seperate #reformat #bbmap

    Tags: interleave, fastq, seperate, reformat, bbmap

    48 days ago

  • BBmap Magic !

    There are common options for most BBMap suite programs and depending on the file extension the input/output format is automatically chosen/set.Note: For most programs in BBTools, you can add the parameter "config=foo.txt". Every line in "foo.txt" will be added as if it were a command-line pa...

    Tags: BBmap

    25 days ago