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Results for "BBmap"

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• • Shruti Paniwala@shruti

  

  BBMap help

  BBMAP • a solution for everything That content has been reformatted and it is being expanded to include more information. There are common options for most BBMap suite programs and depending on the file extension the input/output format is automatically chosen/set. Using BBMap M...

  Tags: Bioinformatics, BBMap, Help, NGS

  2754 days ago

• • Surabhi Chaudhary@surabhi

  

  BBTools for bioinformatician !

  BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken into 6kbp pieces and mapped independently. Code: $ mapPacBio.sh -Xmx20g k=7 in=reads.fastq ref=reference.fa maxlen=1000 minlen=200 idtag ow int=f qin=33 out=mapped1.sam minratio=0.15...

  Tags: BBMap, Map, NGS, Reads, Sam, Bam, Contamination, Filtration

  2261 days ago

• • Jit@jit.aber

  

  reformat.sh in=reads.fq out=highQuality.fq maq=16 (that will throw away all reads with average quality below 16) #Filter #BBMap #Quality

  Tags: Filter, BBMap, Quality

  2148 days ago

• • Poonam Mahapatra@poonam

  

  Convert interleaved to separate files with BBmap. $ reformat.sh in=reads.fq out1=reads_r1.fq out2=reads_r2.fq #interleave #fastq #seperate #reformat #bbmap

  Tags: interleave, fastq, seperate, reformat, bbmap

  2304 days ago

• • biogeek@biogeek

  

  When to use bbmap ?

  I recently came across bbmap. When to use it ?

  Tags: bbmap, mapping, pe, reads

  1438 days ago

• • Jit@jit.aber

  

  BBmap Magic !

  There are common options for most BBMap suite programs and depending on the file extension the input/output format is automatically chosen/set.Note: For most programs in BBTools, you can add the parameter "config=foo.txt". Every line in "foo.txt" will be added as if it were a command-line pa...

  Tags: BBmap

  2281 days ago