Public Databases for Bioinformatics !
...p;https://www.encodeproject.org/files/ENCFF446WOD/@@download/ENCFF446WOD.bed.gz, https://www.encodepr...anford.edu/kundaje/akundaje/release/blacklists/hg38-human/hg38.blacklist.bed.gz. The human genome version...1124 days ago
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Enrichr: a comprehensive gene set enrichment analysis
...180 184 annotated gene sets from 102 gene set libraries. New features have been added to Enrichr including the ability to submit fuzzy sets, upload BED files, improved application p...2550 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), a...834 days ago
CrossMap: a program for convenient conversion of genome coordinates
...t;> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF. CrossMap is...2151 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
JBrowse is a fast, embeddable genome browser built completely with JavaScr...out uploading them to any server. Supports GFF3, BED, FASTA, Wiggle, BigWig, BAM,...her .tbi or .idx index), REST, and more. BAM, BigBed, BigWig, and VCF data are dis...2122 days ago