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Results for "BEDtools"

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• • Shruti Paniwala@shruti

  

  pybedtools

  pybedtools is a Python wrapper for Aaron Quinlan's BEDtools programs (https://github.com/arq5x/bedtools), which are widely used for genomic interval manipulation or "genome algebra". pybedtools extends BEDTools by offering feature-level manipulations from with Python. See full online documentatio...

  Tags: Bioinformatics, Python, BEDtools, Pybedtools

  3531 days ago

• • Jit@jit.aber

  

  bedtools

  Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one tointersect, merge, count,&...

  Tags: Bioinformatics, Analysis, Assembly, Genome, bedtools, View, Alignment, BAM, SAM

  2612 days ago

• • Rahul Nayak@rahul

  

  Get the sequences using coordinates in bed file. $ bedtools getfasta -fi input_file.fa -bed regions_file.bed #Bed #Extract #Sequence #bedtools

  Tags: Bed, Extract, Sequence, bedtools

  2228 days ago

• • Jit@jit.aber

  

  Get the fasta sequence of the coordinates http://bedtools.readthedocs.io/en/latest/content/tools/getfasta.html #Fasta #Bed #Coordinates #Bedtools

  Tags: Fasta, Bed, Coordinates, Bedtools

  2599 days ago

• • Jit@jit.aber

  

  Bedtools wiki https://code.google.com/archive/p/bedtools/wikis/Usage.wiki #Wiki #Bedtools

  Tags: Wiki, Bedtools

  2508 days ago