Results for "BLAST Parser"

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  • A Brief Bioinformatics Tutorial

    This is about how to use a computer to find what is known about a gene of interest and also how to get new insight...you will see how to look efficiently for a particular protein sequence, how to blast...

    3599 days ago

  • YASS :: genomic similarity search tool

    YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it p...of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ...

    2887 days ago

  • Kraken: ultrafast metagenomic sequence classification using exact alignments

    Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to me...s classification accuracy comparable to the fastest BLAST program. In its fastest mode,...million reads per minute, 909 times faster than Megablast...

    2831 days ago

  • Kaiju

    Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is...or the microbial subset of the non-redundant protein database nr used by NCBI BLAST,...

    2831 days ago

  • Bioinformatics tools and software

    USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW.  UPARSE >...

    2823 days ago

  • MEGAN6

    Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox for interactively analyzing micr...hundreds of samples containing hundreds of millions of sequencing reads. Blast-...

    2803 days ago

  • GeneValidator - Identify problems with predicted genes

    GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLAST...

    2771 days ago

  • BLAST Ring Image Generator (BRIG)

    BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large...rence sequence and other sequences as concentric rings. BRIG will perform all BLAST...

    2736 days ago

  • PHYMMBL

    Metagenomics sequencing projects collect samples of DNA from uncharacterized environments that may contain hundred...included in this distribution which combines analysis from both Phymm and BLAST,...

    2726 days ago

  • Standardized velvet assembly report

    Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdfl...2","proto","xtable")) Perl Optional: BLAT or BLAST (to generate alignments again...faToTwoBit,gfClient,gfServer to your PATH. If using BLAST,...

    2666 days ago