A Brief Bioinformatics Tutorial
This is about how to use a computer to find what is known about a gene of interest and also how to get new insight...you will see how to look efficiently for a particular protein sequence, how to blast...3599 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it p...of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ...2887 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to me...s classification accuracy comparable to the fastest BLAST program. In its fastest mode,...million reads per minute, 909 times faster than Megablast...2831 days ago
2831 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. UPARSE >...2823 days ago
2803 days ago
GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLAST...2771 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large...rence sequence and other sequences as concentric rings. BRIG will perform all BLAST...2736 days ago
2726 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdfl...2","proto","xtable")) Perl Optional: BLAT or BLAST (to generate alignments again...faToTwoBit,gfClient,gfServer to your PATH. If using BLAST,...2666 days ago