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Results for "BLAT"

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• • Jitendra Narayan@admin

  

  List of popular bioinformatics software/tools

  In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.

  Tags: Bioinformatics, SamTool, SAM, BAM, IGV, BLAT, Software, Tools

  3930 days ago

• • Radha Agarkar@radhaagarkar

  

  Demo 4: Using BLAST/BLAT in Ensembl

  We demonstrate the BLAST/BLAT tool in Ensembl. Search for a sequence in Ensembl, and identify hits to the genome, or to genes, with this tool.

  Tags: BLAST, BLAT, EnsEMBL

  3875 days ago

• • Jit@jit.aber

  

  Quickly #Finding #Orthologs as Reciprocal Best #Hits with #BLAT, #LAST, and #UBLAST: How Much Do We Miss? http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0101850

  Tags: Finding, Orthologs, Hits, BLAT, LAST, UBLAST

  2531 days ago

• • Jit@jit.aber

  

  UCSC Genome Browser and Blat software !

  This directory contains Genome Browser and Blat application binaries built for standalone command-line use on various supported Linux and UNIX platforms. To determine which set of binaries to download, type "uname -a" on the command line to display your machine type. In most cases the usage state...

  Tags: Bioinformatics, UCSC, Genome, Browser, Blat, Software

  2984 days ago

• • Rahul Nayak@rahul

  

  SCUBAT: Scaffolding Contigs Using Blat And Transcripts

  SCUBAT (Scaffolding Contigs Using BLAT And Transcripts) uses any set of transcripts to identify cases where a transcript is split over multiple genome fragments and attempts to use this information to scaffold the genome.

  Tags: SCUBAT, Scaffolding, Contigs, Blat, Transcripts

  2230 days ago

• • Poonam Mahapatra@poonam

  

  Convert 2bit to psl $ blat myAssembly.2bit -oneOff=0 -noHead myQueryContigSeqs.fa myHits.psl #Convert #psl #2bit #blat

  Tags: Convert, psl, 2bit, blat

  2167 days ago

• • BioStar@biostar

  

  Installing BLAT on Linux !

  It's been a while since I last installed BLAT and when I went to the download directory at UCSC: http://users.soe.ucsc.edu/~kent/src/ I found that the latest blast is now version 35 and that the code to download was: blatSrc35.zip. However, you can also get pre-compiled binaries at...

  Tags: blat, install, linux, alignment

  2048 days ago