Results for "Bin"
Users
About me: ...at 60 genomes per day. At the world’s rate of sequencing, we’ll generate 20 ExaBytes of data by 2025 – more than Twitter, Youtube and astronomy combined. In fact, it would take all...644 days ago
- Interests: CombinatoricsSkills: Combinatorics
3632 days ago
Blogs
- ...the following manner:$ mkdir -p /usr/local/include$ mkdir -p /usr/local/bin$ mkdir -p /usr/local/lib$ mkd...C:\Perl\site\lib\auto\GD\GD.expInstalling C:\Perl\site\lib\auto\GD\GD.libInstalling C:\Perl\html\site\lib...
3924 days ago
List of gene ontology software and tools
...able for all users. Any suggestions are welcome at wego@genomics.org.cn. Here is a sample output generated by WEGO http://wego.genomics.org.cn/cgi-bin/wego/index.pl GeneGO MetaCor...3694 days ago
- +10 more Blogs
Bookmarks
Linux command line exercises for NGS data processing
...ms on a typical Linux system such as ksh, tcsh, and zsh. To see which shell you are using, type [uzi@quince-srv2 ~/linuxTutorial]$ echo $SHELL /bin/bash...2858 days ago
- .... Nevertheless, you can upload any GenBank entry. The workflow is devided into three steps. More at http://ogdraw.mpimp-golm.mpg.de/cgi-bin/ogdraw.pl
2803 days ago
- +23 more Bookmarks
Files
- ...blasr-1.3.1/blasr I'm running "OPERA-LG_v2.0.5/bin/preprocess_reads.pl" and have...read.sai - | grep '\(^@\|XT:A:U\)' | /usr/local/bin/samtools view -S -h -b -F 0x4...at detection.../home/urbe/Tools/OPERA-LG_v2.0.6/bin//filter_conflicting_edge.pl p...
2135 days ago
Pages
- ...ersity School of MedicineAn article from 1995 by Edward Shortliffe describing our medical informatics trai...nbsp;By Salvatore Salamone, Bio-IT World , Sept. 17, 2002. CombinatorX gets $40 million to look...
3905 days ago
Awesome perl frameworks, libraries and software - PART 3
...ally convert POD to a README bingos/bot-gumbynet - (perl)...This is what the module does bingos/cpanplus-yacsmoke - (...erl based installer for Chef bingos/smokebrew - (perl) Au...Small Business Server yaoweibin/nginx_ajp_module - suppo...2478 days ago
Top-level pages
Bioinformatics Courses Around the World
...senschaftliche Informatik (Master's level course) University of Tuebingen, Bioinformatics Finland...//www.flinders.edu.au/calendar/vol2/ug/BScBioinf.htm CA Abbott BINF 2201 (bioinformatics 2) La...3927 days ago
List of In-silico Binding Site Prediction Tools
...e spatial patterns of protein binding sites including both holo...icts interacting partners and binding sites by homology, by ins...structurally similar protein binding sites by local structural...euristics for defining ligand binding sites. Automatically sele...3728 days ago
- +17 more Top-level pages
Wire posts
Fun
Perl Poem: Parse it in both Perl and English!
...following poem published in both the Economist and the Guardian: #!/usr/bin/perl APPEAL: listen (please...secrets;do not, I-beg-you, close them, yet. accept (yourself, changes),bind (grief, despair); require t...3903 days ago
Bio-Scripts
- ...uild, making sure that this non-standard location is baked into the perl binary: cd perl-5.24.1 ./Config...use here at MSKCC: curl -sL https://cpanmin.us | $PERL_BASE/perl-5.24.1/bin/perl - --notest -l $PERL_BASE...
2128 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up import r...1120 days ago
- +157 more Bio-Scripts
Tags
- MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. Users can understand the underlying bins (genomes) of the microbes in their metagenomes by simply providing assembled metagenomic sequences and the reads coverage information or sequenci...
Tags: Bioinformatics, Analysis, Assembly, Genome, Bin, Binning, Metagenomics
2601 days ago
CONCOCT: Clustering cONtigs with COverage and ComposiTion
A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. Warning! This software is to be considered under development. Functionality and the user interface may still change significantly f...Tags: Bioinformatics, Analysis, Assembly, Genome, CONCOCT, Binning, Bin, NGS
2601 days ago
- +1 more Tags
Comments
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...Open the Terminal app on your macOS system. Install Homebrew if you haven't already installed it by entering the following command: /bin/bash -c "$(curl -fsSL https:/...406 days ago
Comment on "Perl Module Installation"
...: Open the Terminal app on your macOS system. Install Homebrew if you haven't already installed it by entering the following command: /bin/bash -c "$(curl -fsSL https:/...406 days ago
- +11 more Comments
