Results for "Bin"

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  • MaxBin: software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm.

    MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. Users can understand the underlying bins (genomes) of the microbes in their metagenomes by simply providing assembled metagenomic sequences and the reads coverage information or sequenci...

    Tags: Bioinformatics, Analysis, Assembly, Genome, Bin, Binning, Metagenomics

    284 days ago

  • CONCOCT: Clustering cONtigs with COverage and ComposiTion

    A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. Warning! This software is to be considered under development. Functionality and the user interface may still change significantly f...

    Tags: Bioinformatics, Analysis, Assembly, Genome, CONCOCT, Binning, Bin, NGS

    284 days ago

  • gbtools: Interactive Visualization of Metagenome Bins in R

    We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of contigs, and also to annotate the plots with taxonomic information. Different sets of annotations, including taxonomic assignments from cons...

    Tags: Bioinformatics, gbtools, Genome, Tool, GC, Bin, Plot

    263 days ago