Results for "Binning"
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MyCC, an automated binning tool that combines genomic signatures, marker genes and optional contig coverages within one or multiple samples, in order to visualize the metagenomes and to identify the reconstructed genomic fragments. More at http://www.nature.com/articles/srep24175Tags: Bioinformatics, Analysis, Assembly, Genome, MyCC, Binning
2609 days ago
- MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. Users can understand the underlying bins (genomes) of the microbes in their metagenomes by simply providing assembled metagenomic sequences and the reads coverage information or sequenci...
Tags: Bioinformatics, Analysis, Assembly, Genome, Bin, Binning, Metagenomics
2606 days ago
CONCOCT: Clustering cONtigs with COverage and ComposiTion
A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. Warning! This software is to be considered under development. Functionality and the user interface may still change significantly f...Tags: Bioinformatics, Analysis, Assembly, Genome, CONCOCT, Binning, Bin, NGS
2606 days ago
GroopM: Metagenomic binning toolset
GroopM is a metagenomic binning toolset. It leverages spatio-temoraldynamics (differential coverage) to accurately (and almost automatically)extract population genomes from multi-sample metagenomic datasets. GroopM is largely parameter-free. Use: groopm -h for more info. For installation and us...Tags: Bioinformatics, Analysis, Assembly, Genome, GroopM, Metagenome, Binning
2605 days ago
