Results for "BioConductor"
Users
Skills: Bioconductor67 days ago
- Skills: R bioconductor
14 days ago
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Blogs
List of bioinformatics packages for NGS analysis !
...ackage suites gather software packages and installation tools for specific languages or platforms. We have some for bioinformatics software. Bioconductor – A plethora of to...1131 days ago
Computer simulation of genetic mechanism !!
...DNA sequences with recombination (inter and intracodon), migration and demography http://code.google.com/p/netrecodon/ OncoSimulR BioConductor package for Forward Genetic S...2964 days ago
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Bookmarks
- ...: load a table, plot some graphs, and perform some basic statistics. More extensive tutorials can be found on the project website and via bioconductor (not covered here). You can...
3897 days ago
A simple tutorial for a complex ComplexHeatmap
...lexHeatmap (Gu, Eils, and Schlesner (2016)) is an R Programming Language (R Core Team (2020)) package that is currently listed in the Bioconductor package repository. ins...1118 days ago
- +13 more Bookmarks
Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
...Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of...3941 days ago
Pages
A guide for complete R beginners :- Installing R packages
Part of the reason R has become so popular is the vast array of packages available at the cran and bioconductor repositories. In the last few years, the number of packages has grown expo...3346 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
.... Anders and Huber, Genome Biology 11:R106, 2010 Full Text edgeR: a Bioconductor package for differential expr...Online resources The R statistical computing environment includes Bioconductor, a specialized set of tools f...3768 days ago
List of bioinformatics open source projects/software.
...informatics based on the Eclipse Rich Client Platform (RCP). Bioconductor http://www.bioconductor.org/ R (programming language...techniques and reporting results. supraHex An open-source R/Bioconductor package for omics data analys...3746 days ago
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Wire posts
News
RNA-Seq Data Pathway and Gene-set Analysis Workflows
...analysis or visualization. All these workflows are implemented in R/Bioconductor. The work ows cover the most.... Note: You need to update to current release versions of R(3.0.2)/ Bioconductor(2.13) to use all the features...3822 days ago
Surrogate Variable Analysis (SVA)
...and improve reproducibility, see (Leek and Storey 2007 PLoS Genetics, 2008 PNAS or Leek et al. 2011 Nat. Reviews Genetics). More at http://www.bioconductor.org/packages/release/bioc/htm...3464 days ago
Opportunity posts
- ...osition. Experience with high throughput sequencing analysis methods, machine learning, protein interaction databases, perl/python scripting or BioconductoR are preferred. For more infor...
3937 days ago
Sr.Bioinformatics Analyst (NGS) at Ocimum Biosolution
...application development or must have expertise in programming using either of Perl/Python. 3. Experience in statistical programming using R/Bioconductor/Matlab. 4. Strong concept...3448 days ago
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Bio-Scripts
Installing SEVA environment in Conda !
...##################### | 100% bioconductor-iranges | 2.4 MB | #######...##################### | 100% bioconductor-biocins | 62 KB | #######...##################### | 100% bioconductor-xvector | 724 KB | #######...##################### | 100% bioconductor-biostri | 13.8 MB | #######...827 days ago
- ...mming language originally released in 1995. It is heavily used in the bioinformatics community largely due to numerous R libraries available on bioconductor. It takes a several minutes t...
812 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...D: 26384938 can be read. What's your all-time favourite bioinformatics package, and why? For me, the best bioinformatics package is R/Bioconductor. The reason why I like this p...2351 days ago
Groups
...with the availability of huge genomic data and biological packages. Bioconductor provides tools for the analysis and comprehension of high-throughput genomic data. Bioconductor uses the R statistical progra...3940 days ago
Tags
RNA-Seq Data Pathway and Gene-set Analysis Workflows
It describe the GAGE (Luo et al., 2009) /Pahview (Luo and Brouwer, 2013) workflows on RNA-Seq data pathway analysis and gene-set analysis. The gage package (2.12.0) now includes a new tutorial, “RNA-Seq Data Pathway and Gene-set Analysis Workflows“. First cover a full workf...Tags: R, Bioconductor, RNA-seq, GAGE, Pathway
3822 days ago
Surrogate Variable Analysis (SVA)
The sva package contains functions for removing batch effects and other unwanted variation in high-throughput experiment. Specifically, the sva package contains functions for the identifying and building surrogate variables for high-dimensional data sets. Surrogate variables are covariates constr...Tags: RNA-seq, Genomics, R, Bioconductor
3464 days ago
Comments
Comment on "R and Bioconductor Tutorial"
R graphics https://bioconductor.org/packages/devel/bioc/vignettes/chromPlot/inst/doc/chromPlot.pdf #chromPlot2003 days ago
Comment on "Generates a genome coverage plot with R"
Tutorial at https://bioconductor.org/packages/devel/bioc/vignettes/CoverageView/inst/doc/CoverageView.pdf2044 days ago
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