Results for "Bioinformatics"

Tags

  • Ten recommendations for creating usable bioinformatics command line software

    Bioinformatics software varies greatly in quality. In terms of usability, the command line interface is the first experience a user will have of a tool. Unfortunately, this is often also the last time a tool will be used. Here I present ten recommendations for command line software author’s...

    Tags: Bioinformatics, Computational Biology, Rules, Server, Software, Tips, Suggestions

    3582 days ago

  • Bioinformatician’s Pocket Reference !!

    It is amusing how brain of bioinformaticians work! Learning a new programming language for days feels so much of fun that making 5 minute discussion with neighbours (unless under special circumstances!) in our own mother-tongue. Today every bioinformatician keeps more than few languages and core ...

    Tags: Bioinformatics, Computational Biology, Pocket, Reference

    3582 days ago

  • Bioinformatics algorithms tutorials

    Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search Algorithms)NGS Genome and RNAseq Assembly - a Hands on PrimerIntroduction to PERL, Python, R and C/C++ for Bioinfo...

    Tags: Bioinformatics, Computational Biology, NGS, Tutorial, Algorithms, Concept

    3566 days ago

  • Orione – a web-based framework for NGS analysis in microbiology

    End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the construction of computational pipelines that use different software packages is difficult due t...

    Tags: Bioinformatics, Computational Biology, NGS, Orione, Microbiology, Visualization

    3537 days ago

  • Integrative Genomics Viewer (IGV) tutorial

    The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predicted genetic variants. http://www.broadinstitute.org/...

    Tags: Bioinformatics, Computational Biology, NGS, IGV, Visualization, Tutorial

    3548 days ago

  • COSMOS, our workflow management system for NGS data

    COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-access published via Advance Access in Bioinformatics (Gafni et al. 2014).  It is also available for download fo...

    Tags: Bioinformatics, Computational Biology, NGS, COSMOS, Python, Workflow

    3537 days ago

  • MEGADOCK 4.0

    An ultra–high-performance protein–protein docking software for heterogeneous supercomputers Summary: The application of protein–protein docking in large-scale interactome analysis is a major challenge in structural bioinformatics and requires huge computing resources. In this w...

    Tags: Bioinformatics, Computational Biology, Protein, Docking

    3521 days ago

  • Swabs to Genomes: A Comprehensive Workflow

    The sequencing, assembly, and basic analysis of microbial genomes, once a painstaking and expensive undertaking, has become almost trivial for research labs with access to standard molecular biology and computational tools. However, there are a wide variety of options available for DNA library pr...

    Tags: Bioinformatics, Computational Biology, Workflow, Genome, Commands

    3519 days ago

  • Arvados

    Arvados is a free and open source bioinformatics platform for genomic and biomedical data. User can Store | Organize | Compute | Share the data for free. 

    Tags: Bioinformatics, Computational Biology, Big data, Analysis, Share, Run, Compute, Free, Arvados, Organise, Store

    3477 days ago

  • Java utilities for Next Generation Sequencing by Pierre Lindenbaum

    Java utilities for Bioinformatics https://github.com/lindenb/jvarkit

    Tags: Bioinformatics, Computational Biology, Java, Utilities #Tools #Scripts #Pierre

    3482 days ago