Results for "Bioperl"
Bio-Scripts
BioPerl to convert between sequence formats from Fasta to Genbank
#!/usr/local/bin/perl -w # Sequence formats to choose: Fasta, EMBL. GenBank, Swissprot, PIR and GCG use Bio::SeqIO; $inFile = "BRCA2.fa"; $in = Bio::SeqIO-...2906 days ago
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2907 days ago
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be freely distributed under GNU General Public License. # This script will parse a NCBI blastx output file and...2904 days ago
Find and replace ambiguous characters in fasta file with Perl and Bioperl
#!/usr/bin/perl -w my $usage="\nUsage: $0 [-h] [-m char] [fastaFileName1 ...]\n". " -h: help\n". " -m: missing character\n". "Print out the name of...2904 days ago
Installing pb-assembly on Linux !
...libxml2/2.9.0-goolf-1.4.10 binutils/2.28-GCCcore-6.4.0 libxml2/2.9.3-foss-2016a BioPerl/1.6.924-foss-2016a-Perl-5.22....2024 days ago
- ...Docker daemon 9.023MB Step 1/12 : FROM ubuntu:14.04 ---> 6e4f1fe62ff1 Step 2/12 : FROM perl:latest ---> 82330051f9cb Step 3/12 : FROM bioperl/bioperl-deps ---> e890cc223da3 Ste...
1499 days ago
- ...Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 ---> 6e4f1fe62ff1 Step 2/16 : FROM perl:latest ---> de6996f7ef50 Step 3/16 : FROM bioperl/bioperl-deps ---> e890cc223da3 Ste...
1432 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen so...
1205 days ago
Perl and BioPerl script to extract protein sequences using GFF file !
#!/usr/bin/perl use strict; use warnings; use Bio::DB::Fasta; use Bio::SeqIO; # Paths to your GFF file and genome FASTA file my $gff_file = 'path/to/your/file.g...84 days ago
