Results for "Blocks"
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Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filteri...2719 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...tness of both. GAM-NGS does not rely on global alignment: regions of the two assemblies representing the same genomic locus (called blocks) are identified through reads...2679 days ago
Many-Core Engine (MCE) for Perl example
...model. MCE::Flow is similar to MCE::Loop, but allows for multiple code blocks to run in parallel with a sli...and MCE::Queue. Like with MCE::Flow, MCE::Stream can run multiple code blocks in parallel with a slight cha...2636 days ago
- A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat) This tool is a standalone version of Ragout module [http://fenderglass.github./Ragout]
2529 days ago
Synteny Portal: a web-based application portal for synteny block analysis
...constructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i) construct synteny blocks among multiple species by usi...s as high-quality images, (iii) browse synteny blocks with genetic information and...2523 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
...ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of genomes represented as sequences of genes (or synteny blocks) and produces such sequences...2461 days ago
- ...tive genomics, we can identify anchors, chain them into syntenic blocks and interpret these blocks as derived from a common desc...lications (plant genomes in particular), we have large number of blocks that are not orthologous, but...
2455 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
Gblocks eliminates poorly aligned positions and diver...ver implements the most important features of the Gblocks program to make its use as si...here an example output file showing the blocks selected from a protein align...2149 days ago
- ...ing steps: Step 1. Run mugsy to get multiple sequence alignment results. Step 2 & 3. Extraction of the Coordinates of Core Blocks, Construction of Synteny Blocks and Generating Signed Permuta...
2031 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
...d via command line. CSBFinder implements a novel methodology for the discovery, ranking, and taxonomic distribution analysis of colinear syntenic blocks (CSBs) - groups of genes that...2004 days ago
