Why BreakDancer does not displays the amount of reads supporting SV?
Using breakdancer the output consists of DEL, INV, INS, CTX and ITX. Using following commands: bam2cfg.pl -g -h dis.bam normal.bam > config_file.cfgbreakdancer_max -d test config_file.cfg > dis_normal.ctx the 11th output column should displays the amount of reads supporting the called SV ...Tags: Bioinformatics, SV, BreakDancer, Reads, Depth
2687 days ago