Results for "Breakpoints"
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Destruct is a tool for joint prediction of rearrangement breakpoints from single or multiple tumour samples. More at https://bitbucket.org/dranew/destruct2978 days ago
- ...ng. The Rearrangement Overview page describes the one or more breakpoints which make up a structural&nb...of this data. One variant event can consist of one or multiple breakpoints. The Syntax (shown above the...
2763 days ago
- ...ions by virtue of the genomic location of CNA-associated chromosomal breaks and identify genes that appear non-randomly affected by chromosomal breakpoints across (large) series of tumo...
2144 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...brary preparation protocol artifacts (biotin junction reads, paired-end read contamination, chimeras, etc.), and presence of structural variant breakpoints within reads increases mappin...2689 days ago
- ...ngs per defined segment of the query. We show that YAHA detects more breakpoints in less time than BWA-SW acro...SV classes, and especially excels at complex SVs comprising multiple breakpoints. Availability: YAHA is curre...
2652 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...human genome sequence data. The precision is further increased by mapping inversions as small as 31 bp. Analysis of the predicted evolutionary breakpoints in the human lineage confirms...2534 days ago
Reference-free prediction of rearrangement breakpoint reads
...oretical analyses of the number of neighboring reads. When applied to a dataset with a sequencing depth of 100×, it finds ∼88% of the breakpoints correctly with no false-posit...2240 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...e sequencing error and real genomic variations at the same time and makes it especially effective at more precisely identifying the position of breakpoints stemming from structural vari...2192 days ago
- Breakpointer is a fast tool for locating sequence breakpoints from the alignment of single end reads (SE) produced by next generation sequencing (NGS). It adopts a heuristic method in s...
2144 days ago
- SRBreak is a read-depth and split-read package written in R for identifying copy-number variants in next-generation sequencing datasets. Note: SBReak was designed to w...
2172 days ago
