Results for "BroadInstitute"
Blogs
List of bioinformatics workflow management tools !
Here are list of Workflow Managers BigDataScript – A cross-system scripting language for working with big data pipelines in computer systems of different...1127 days ago
Computer simulation of genetic mechanism !!
...ttp://users-birc.au.dk/mailund/coasim/index.html cosi The cosi package is written in C and is available as a tar file. http://www.broadinstitute.org/~sfs/cosi/ CS-PSeq...2959 days ago
Tools and Method for Haplotype phasing !
....rockefeller.edu/soft/gh/ The Genome Analysis Toolkit: http://www.broadinstitute.org/gsa/wiki/index.php/The_Ge...plem/ “Read-backed phasing” algorithm: http://www.broadinstitute.org/gsa/wiki/index.php/Read-b...1323 days ago
List of cancer genomics research web resources !
...utation database; genome sequencing paper curation CPRG http://www.broadinstitute.org/software/cprg Interface for cancer program resources GDAC http://gdac.broadinstitute.org/ Data analysis; automatic...2305 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...hub.com/lh3/miniasm ra-integrateOLChttps://github.com/mariokostelac/ra-integrate/ ALLPATHS-LGde Bruijn graph ALLPATHS-L correctorhttps://www.broadinstitute.org/software/allpaths-lg/blog...2305 days ago
List of tools frequently used while genome assembly
List of tools frequently used while genome assembly: I have used the following assemblers Spades (v. 3.10.1) CANU (v. 1.6) Unicycler (v. v0.4.1) Minia...1914 days ago
Software for genome assembly !
...onlab/redundans 7 Arrow error correction https://github.com/PacificBiosciences/ GenomicConsensus 8 PILON error correction https://github.com/broadinstitute/pilon/wiki 9 BUSCO single co...1328 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...image2/index.php?title=Main_Page Genome visualisers and editors:Artemis - http://www.sanger.ac.uk/resources/software/artemis/IGV - http://www.broadinstitute.org/igv/ Automated and semi...1189 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment (B...861 days ago
