Results for "BroadInstitute"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant to a...3769 days ago
List of bioinformatics open source projects/software.
...tific workflow and data integration system GenePattern http://www.broadinstitute.org/cancer/software/genepatte...sktop genome browser Integrative Genomics Viewer (IGV) http://www.broadinstitute.org/igv/ High-performance de...3746 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...phic models. http://users-birc.au.dk/mailund/coasim/index.htmlcosi The cosi package is written in C and is available as a tar file. http://www.broadinstitute.org/~sfs/cosi/CS-PSeq-Gen A p...3727 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizations, Biological Int...2898 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short rea...2675 days ago
List of visualization tools for network biology
....fr/eng/proviz.htm SpectralNET Network analysis and visualizations. Scatter plots and dimensionality reduction algorithms https://www.broadinstitute.org/software/spectralnet Tul...2278 days ago
List of visualization tools for genome alignments
...isualization of large heterogeneous datasets, providing a smooth and intuitive user experience at all levels of genome resolution https://www.broadinstitute.org/igv/ ZOOM Lite NG...2273 days ago
Some useful Bioinformatics links
...lot – Gigabase or gigabyte https://gigabaseorgigabyte.wordpress.com/2017/06/01/example-gallery-of-nanoplot/ Tool documentation https://broadinstitute.github.io/picard/command-line...2231 days ago
List of non-commercial NGS genotype-calling software
...on of NGS alignments, which includes a computation of genotype likelihoods (samtools) and SNP and genotype calling (bcftools) GATK http://www.broadinstitute.org/gsa/wiki/index.php/The_Ge...2086 days ago
