Tags: Bioinformatics, Guide, Tutorial, Browser, MicroScope, Toolbox, Bio
2946 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalone command-line use on various supported Linux and UNIX platforms. To determine which set of binaries to download, type "uname -a" on the command line to display your machine type. In most cases the usage state...Tags: Bioinformatics, UCSC, Genome, Browser, Blat, Software
2961 days ago
Tags: Bioinformatics, Guide, Tutorial, Genome, Script, Bash, GBrowse, Annotaion, Browser
2960 days ago
gEVAL: Genome Evaluation Browser
The gEVAL Browser allows the evaluation of genome assemblies through its tools and pre-computed analyses. The strength of this browser is the ability to navigate an up to date assembly and identify problematic regions and assist in strategizing potential solutions for these issues. Th...Tags: gEVAL, Genome, Evaluation, Browser
1745 days ago
Tags: 3DGenome, Browser, explore, chromatin, interaction, data, Hi-C, ChIA-PET, Capture, Hi-C, PLAC-Seq
1161 days ago
UCSC SARS-CoV-2 Genome Browser
The UCSC SARS-CoV-2 Genome Browser (https://genome.ucsc.edu/covid19.html) is an adaptation of our popular genome-browser visualization tool for this virus, containing many annotation tracks and new features, including conservation with similar viruses, immune epitopes, RT–PCR and sequencing...Tags: UCSC, SARS-CoV-2, Genome, Browser, COVID19
812 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time. Once a query gene has been entered, it is displayed in its genomic context in parallel...Tags: Genomicus, genome, browser, enables, navigate, genomes, several, dimensions
2322 days ago
G-compass: a comparative genome browser
G-compass (http://www.h-invitational.jp/g-compass/) is a comparative genome browser. It visualizes evolutionarily conserved genomic regions between human and other 12 vertebrates based on original genome alignments pursuing higher coverage (1,2). Annotations of human genes/transcripts and their o...Tags: G-compass, comparative, genome, browser, visualization
2177 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
JBrowse is a fast, embeddable genome browser built completely with JavaScript and HTML5, with optional run-once data formatting tools written in Perl. Headline Features: Fast, smooth scrolling and zooming. Explore your genome with unparalleled speed. Scales easily to multi-gigabase genomes a...Tags: JBrowse, Embeddable, genome, browser, genome, reads, view, map, JavaScript, HTML5
2099 days ago
pyGenomeTracks: Standalone program and library to plot beautiful genome browser tracks
pyGenomeTracks aims to produce high-quality genome browser tracks that are highly customizable. Currently, it is possible to plot: bigwig bed (many options) bedgraph links (represented as arcs) Hi-C matrices (if HiCExplorer is installed)Tags: Standalone, program, library, plot, beautiful, genome, browser, tracks
1966 days ago