Results for "Browser"

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  • Microscope

    Microscope Platform user documentation. The MicroScope platform is available at this URL: https://www.genoscope.cns.fr/agc/microscope

    Tags: Bioinformatics, Guide, Tutorial, Browser, MicroScope, Toolbox, Bio

    2946 days ago

  • UCSC Genome Browser and Blat software !

    This directory contains Genome Browser and Blat application binaries built for standalone command-line use on various supported Linux and UNIX platforms. To determine which set of binaries to download, type "uname -a" on the command line to display your machine type. In most cases the usage state...

    Tags: Bioinformatics, UCSC, Genome, Browser, Blat, Software

    2961 days ago

  • Genome Browser : GBrowse

    Generic Genome Browser Version 2: A Tutorial for Administrators This is an extensive tutorial to take you through the main features and gotchas of configuring GBrowse as a server. This tutorial assumes that you have successfully set up Perl, GD, BioPerl and the other GBrowse dependencies. If you...

    Tags: Bioinformatics, Guide, Tutorial, Genome, Script, Bash, GBrowse, Annotaion, Browser

    2960 days ago

  • gEVAL: Genome Evaluation Browser

    The gEVAL Browser allows the evaluation of genome assemblies through its tools and pre-computed analyses. The strength of this browser is the ability to navigate an up to date assembly and identify problematic regions and assist in strategizing potential solutions for these issues. Th...

    Tags: gEVAL, Genome, Evaluation, Browser

    1745 days ago

  • 3D Genome Browser: explore chromatin interaction data, such as Hi-C, ChIA-PET, Capture Hi-C, PLAC-Seq, and more

    Beside visualizing chromatin interaction data, you can also seamlessly browse other omics data such as ChIP-Seq or RNA-Seq for the same genomic region, and gain a complete view of both regulatory landscape and 3D genome structure for any given gene. You can also check the expression of any querie...

    Tags: 3DGenome, Browser, explore, chromatin, interaction, data, Hi-C, ChIA-PET, Capture, Hi-C, PLAC-Seq

    1161 days ago

  • UCSC SARS-CoV-2 Genome Browser

    The UCSC SARS-CoV-2 Genome Browser (https://genome.ucsc.edu/covid19.html) is an adaptation of our popular genome-browser visualization tool for this virus, containing many annotation tracks and new features, including conservation with similar viruses, immune epitopes, RT–PCR and sequencing...

    Tags: UCSC, SARS-CoV-2, Genome, Browser, COVID19

    812 days ago

  • Genomicus: genome browser that enables users to navigate in genomes in several dimensions

    Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time. Once a query gene has been entered, it is displayed in its genomic context in parallel...

    Tags: Genomicus, genome, browser, enables, navigate, genomes, several, dimensions

    2322 days ago

  • G-compass: a comparative genome browser

    G-compass (http://www.h-invitational.jp/g-compass/) is a comparative genome browser. It visualizes evolutionarily conserved genomic regions between human and other 12 vertebrates based on original genome alignments pursuing higher coverage (1,2). Annotations of human genes/transcripts and their o...

    Tags: G-compass, comparative, genome, browser, visualization

    2177 days ago

  • JBrowse: Embeddable genome browser built completely with JavaScript and HTML5

    JBrowse is a fast, embeddable genome browser built completely with JavaScript and HTML5, with optional run-once data formatting tools written in Perl. Headline Features: Fast, smooth scrolling and zooming. Explore your genome with unparalleled speed. Scales easily to multi-gigabase genomes a...

    Tags: JBrowse, Embeddable, genome, browser, genome, reads, view, map, JavaScript, HTML5

    2099 days ago

  • pyGenomeTracks: Standalone program and library to plot beautiful genome browser tracks

    pyGenomeTracks aims to produce high-quality genome browser tracks that are highly customizable. Currently, it is possible to plot: bigwig bed (many options) bedgraph links (represented as arcs) Hi-C matrices (if HiCExplorer is installed)

    Tags: Standalone, program, library, plot, beautiful, genome, browser, tracks

    1966 days ago