CISA: Contig Integrator for Sequence Assembly
...generate different sets of contigs for bacterial genomes. A tool, named CISA, has been developed to integr...Mmer and BLAST+ to be installed on the local machine. The source code of CISA and examples of its use are a...2688 days ago
Genome Assembly Tools and Software - PART1 !!
...e, whereas its goal is not to make memory usage as low as possible. CISA 20140304 – Contig Integrator for Sequence Assembly CISA has been developed to integra...2675 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of genomes, however, no individual assembler guarantees the optimal assembly for diverse species. Optimizing various parameters in an assembler is often performed in order to generate the most optimal assembly. Howev...Tags: Bioinformatics, CISA, Assembly, Genome, Merger, Merge, CrossCompare
2688 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic genome assembly and annotation can be obtained with ease. It performed better than de novo assemblers and contig integration software. ...Tags: Bioinformatics, CISA, MyPro, Genome, Annotation, Pipeline, Prokaryotes
2688 days ago