Results for "CRAM"

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  • Picard

    Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the Hts-specs repository. See especially the SAM specification and the VCF specification. Note that the information on this pag...

    Tags: Bioinformatics, NGS, Assembly, BAM, SAM, CRAM, Picard, FastQC, Tool, Software

    2890 days ago

  • mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

    mosdepth can output: per-base depth about 2x as fast samtools depth--about 25 minutes of CPU time for a 30X genome.mean per-window depth given a window size--as would be used for CNV calling.the mean per-region given a BED file of regions.a distribution of proportion of bases covered at or above...

    Tags: mosdepth, fast, BAM, CRAM, depth, calculation, WGS, exome, target, sequencing

    1593 days ago