Results for "Chromatin"
Blogs
List of motif discovery tools !
...nce alignments use different methodologies. W-ChIPMotifs -- ChIP-based protein Motif discovery web server Find de novo protein motifs from chromatin immunoprecipitation data....1984 days ago
Bookmarks
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA...3696 days ago
- ...t of extensive research, centromere locations in yeast genomes are difficult to infer, and in most species they are still unknown. Recently, the chromatin conformation assay Hi-C has b...
2995 days ago
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Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...tral Assemblathon 1: A competitive assessment of de novo short read assembly methods. Earl et al, Genome Research 21:2224-2241, 2011 Full Text Chromatin immunoprecipation analysis: C...3770 days ago
Commercial and public next-gen-seq (NGS) software
...erl/R. FindPeaks - perform analysis of ChIP-Seq experiments. It uses a naive algorithm for identifying regions of high coverage, which represent Chromatin Immunoprecipitation enrichmen...3509 days ago
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Wire posts
News
Chromatin: From nucleosomes to chromosomes, 30 April - 2 May 2014
...ced the Wellcome Trust Scientific Conference Chromatin: From nucleosomes to chromoso...f meetings focused on fundamental aspects of chromatin biology. The conference will...on the latest developments in understanding chromatin structure and function, parti...3915 days ago
- ...in 2007, microarray-based technologies were used to detect regions associated with transcription factors, certain histone modifications and open chromatin within a pre-specified 1% of...
1356 days ago
Opportunity posts
PhD at INSTITUTE OF LIFE SCIENCES, Bhubaneswar
...cipal investigator 1. Computational Cancer Biology Dr. Anshuman Dixit 2. Immunogenomics & Systems Biology Dr. Sunil Kumar Raghav 3. Chromatin remodeling and hematopoiesis...2888 days ago
- ...tilizing a combination of cellular, molecular genetics, Biochemical and computational tools in combination with next generation sequencing based chromatin structure analysing methods....
2888 days ago
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ResearchLabs posts
- They develop machine learning techniques to better understand chromatin biology. These models and algorithms transform high-dimensional functional genomics data into interpretable patterns and lead to new biological insight. https://www.pmgenomics.ca/hoffmanlab/
3027 days ago
- ...ic variation on molecular phenotypes and human disease. We develop methods for integrating diverse functional genomic datasets of transcription, chromatin modifications, regulator bind...
3007 days ago
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Video
DNA is packaged in a chromosome experiment
...cores.[1] This structure is often compared to thread wrapped around a spool.[2] Nucleosomes form the fundamental repeating units of eukaryotic chromatin,[3] which is used to pack the...3867 days ago
How DNA is Packaged (Advanced)
...leosome. Six nucleosomes are coiled together and these then stack on top of each other. The end result is a fiber of packed nucleosomes known as chromatin. This structure, is then loop...3867 days ago
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Tags
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at distal genomic locations can interact with each other via chromatin folding and affect gene expression levels. Genomic technologies for mapping interactions between DNA regions, e.g., ChIA...
Tags: Bioinformatics, Analysis, Visualization, Chromatin, NGS, HiC
2859 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivaria...Tags: Bioinformatics, ChromHMM, Chromatin, Discovery, Characterization, Chromosome
2564 days ago
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Comments
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...Systems Biology BioinformationGenome AnnouncementsBMC GeneticsBMC Medical GeneticsBMC Medical GenomicsClinical EpigeneticsEpigenetics & Chromatin2318 days ago
