3895 days ago
Next generation sequencing in R or bioconductor environment
...anges container, the GRanges/GRangesList classes are more flexible and extensible to store additional information about sequence ranges, such as chromosome identifiers (sequence space),...3577 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...le files Polymutt Description: calls SNVs and detects de novo point mutations in families Input: GLF or BAM or VCF (must have identical chromosome orders) Output: VCF Bas...2861 days ago
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Phylogenetic & Molecular Genetics Terms and Definitions
...ognized and thus used to characterize the larger DNA sequence and the chromosome in which it occurs. ho...infer common ancestry (shared derived state). synteny -- Portions of chromosomes in which gene order is conse...2415 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ers) Software (C) https://github.com/lh3/minimap Assembly De novo genome assembly MHAP Produces highly continuous assembly (fully resolved chromosome arms) from third-generation l...2324 days ago
Some useful Bioinformatics links
...yte.wordpress.com/2017/06/01/example-gallery-of-nanoplot/ Tool documentation https://broadinstitute.github.io/picard/command-line-overview.html Chromosome-scale scaffolding of de novo...2194 days ago