Results for "Chromosome"
Bookmarks
fineSTRUCTURE v2 & GLOBETROTTER
...his page provides information about and downloads for methodology for Chromosome Painting. It is not a facilit...alyse your genome. Sorry if you were misled by the punchy name! About Chromosome Painting Painting is an effic...2628 days ago
- ...df -or- Rscript Ideoplot.R --annotate annotations.bed Options --ideobed, i A bed file of reference contig lengths/chromosome names --heatmap, -h Fill chromosomes with normalized heatmap...
2628 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the reference sequence dictionary (...y BAM files if no sam record was found for a chromosome. A pair of 'mock' SAM-Records...exed reference file) REQUIRED. -u (unmapped chromosome name): default:Unmapped -e |...2613 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...der and orientation of those intervals from their observed adjacencies in modern species. We combine the results from this method with data from chromosome painting experiments to produ...2534 days ago
orthodotter: Synteny plots (oxford grid)
...-bg : background color, default is transparent -fSize <int> : fontSize, default is 1 -filter : check chromosome names -h :...2451 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly...2349 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
...g a user-friendly interactive interface, possibility for simultaneous chromosome and FISH/GISH/banding signal...g as well as number of useful functions facilitating the procedure of chromosome analysis," explain the scient...2340 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver, eSC al...2329 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
...reproduce the Hs2-HiC and the AaegL4 genomes reported in: Dudchenko et al., De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science, 20...2309 days ago
- ...MAP, LINK, LINE, SCATTER, ARC, TEXT, and HISTGRAMmodules to display genome-wide genetic variations (SNPs, CNVs and chromosome rearrangement), gene expressi...
2287 days ago
