Results for "Chromosome"

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  • Can you recommend me some interactive tools to visualize chromosomes?

    I am looking for new, interactive and user friendly tools to see chromosomal rearrangements. I tried IGV, but it does not seems to be very helpful for chromosomal rearrangements visualization. Circos look pretty useless, as it does not allow me to explore well. Help Please...

    Tags: Bioinformatics, Visualize, Chromosome, See, View, Genome, Tools

    184 days ago

  • PhenoGram

    With PhenoGram researchers can create chomosomal ideograms annotated with lines in color at specific base-pair locations, or colored base-pair to base-pair regions, with or without other annotation. PhenoGram allows for annotation of chromosomal locations and/or regions with shapes in different c...

    Tags: Bioinformatics, Analysis, Assembly, Genome, Chromosome, Plot, Phenome

    166 days ago

  • Pacbio Long Reads Compatible Software and Tools

    The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT® Analysis suite. All packages are believed to be open source or freely available for non-commercial use. See the individual project sites for up-to-date license information. A se...

    Tags: Bioinformatics, Chromosome, Genome, NGS, Align, LongReads, LR, Reads, Pacbio

    157 days ago

  • ChromHMM: Chromatin state discovery and characterization

    ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivaria...

    Tags: Bioinformatics, ChromHMM, Chromatin, Discovery, Characterization, Chromosome

    123 days ago

  • Bienko and Crosetto Labs

    We are two groups of scientists doing frontier research in quantitative biology and biomedicine. The Bienko group is interested in exploring the fundamental design principles controlling how DNA is packed in the eukaryotic nucleus and its relation to gene expression regulation. The Crosetto group...

    Tags: Nicola Crosetto, Magda Bienko, Lab, Chromosome, DNA, Bioinformatics, Histone, Omics, Tumor

    100 days ago

  • GenomeComp

    GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertions or deletions of genome segments between species or strains.It can be easily used to compare, parsi...

    Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, GenomeComp

    184 days ago

  • sockeye

    This sockeye software uses the Ensembl database project to import sequence and annotation information from several eukaryotic species. A user can additionally import their own custom sequence and annotation data. Individual annotation objects are displayed in Sockeye by using custom 3D model...

    Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, sockeye, 3D

    184 days ago

  • J-Circos

    Circos plot tool (J-Circos) that is an interactive visualization tool that can plot Circos figures, as well as being able to dynamically add data to the figure, and providing information for specific data points using mouse hover display and zoom in/out functions. J-Circos uses the Java computer ...

    Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, J-Circos

    184 days ago

  • Map the #density on #chromosome with perl https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1055-0

    Tags: density, chromosome

    166 days ago

  • #Plot data along #chromosome #ideograms https://bioconductor.org/packages/devel/bioc/vignettes/IdeoViz/inst/doc/Vignette.pdf #IdeoViz

    Tags: Plot, chromosome, ideograms, IdeoViz

    40 days ago