Results for "Chromosome"
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ShRec3D is a program that aims at reconstructing a genome 3D structure (b) from the sole knowledge of the contacts between different genomic regions (a) as determined by Hi-C (http://www.ncbi.nlm.nih.gov/pubmed/19815776). There are two options to run ShRec3D (on linuX only so far): the first one...Tags: Bioinformatics, Computational Biology, ShRec3D, 3D genome, Genome, Hi-C, Chromosome
3409 days ago
- Chromosome number is a remarkably dynamic feature of eukaryotic evolution. Chromosome numbers can change by a duplication of the whole genome (a process termed polyploidy), or by single chromosome changes (ascending dysploidy via, e.g., chromosome fission or descending dysploidy via, e.g., chromo...
Tags: Bioinformatics, Computational Biology, Chromosome, Evolution, ChromEvol
3378 days ago
- A program to detect recombination hotspots using population genetic data. More at https://github.com/auton1/LDhot
Tags: Recombination, Tool, Chromosome, LDhot
3005 days ago
Pattern Searching in a Single Genome
Pattern searching holds much importance for biologists , for the understanding of DNA ( and its functionality) can be more than a matter of satisfying curiosity , but also give answers to many issuess uchas medical conditions . However,there are a number of ways of searching with in a single chro...Tags: Bioinformatics, Genomics, Pattern, Chromosome, Study
2971 days ago
Efficient genome searching with Biostrings and the BSgenome data package
Tags: BioStrings, R, Search, Pattern, Genome, Chromosome, Bioinformatics
2971 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly important. Using the power of the human visual system to detect trends and spot outliers is necessary in such large and complex data sets. More at http:/...Tags: Bioinformatics, NGS, Visualization, Chromosome, Comparative genomics
2921 days ago
- Records in 4DGenome are compiled through comprehensive literature curation of experimentally-derived and computationally-predicted interactions. The current release contains 4,433,071 experimentally-derived and 3,605,176 computationally-predicted interactions in 5 organisms. Experimental data cov...
Tags: Bioinformatics, 4DGenome, Database, Computational, Predicted, Interactions, Chromosome, Genome, NGS
2852 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus traits. The map positions (chromosomal) for neutral markers (e.g. SNPs) and loci under selection (QTLs, deleterious mutations, DMIs) can now be specified explicitly, or set at random. The map can hold an unlimited number of loci...Tags: Bioinformatics, Nemo, Simulation, Chromosome, Genome, NGS
2763 days ago
- The accurate description and annotation of structural variants can be complex. This is due to the different resolution that variants are reported from traditional cytogenetic coordinates down to the actual base pair positions. Furthermore, multiple rearrangements in a single area ...
Tags: Bioinformatics, COSMIC, Chromosome, Cancer, Rearrangement, Breakpoints
2763 days ago
- Development of cancer is driven by somatic alterations, including numerical and structural chromosomal aberrations. Currently, several computational methods are available and are widely applied to detect numerical copy number aberrations (CNAs) of chromosomal segments in tumor genomes. However, t...
Tags: Bioinformatics, GeneBreak, Chromosome, Genome, NGS, Breakpoints, Genes
2144 days ago
