BGAgenomicsDB: Acaryochloris marina MBIC11017 - A cyanobacterial organim
...hnology etc. One of the cyanobacterial organism is Acaryochloris marina MBIC11017. This organism has one circular chromosome and 9 plasmids. Chromosome's circular view Want to...3038 days ago
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CGView - Circular Genome Viewer
...tic images of a genome to a file. GView can draw a genome using either circular or linear layouts. For exampl...w can produce, see the Image Gallery. GView is a re-write of CGView, a circular genome viewer written by Paul...2747 days ago
Some useful Bioinformatics links
...b.io/karyoploter_tutorial//Tutorial/CreateIdeogram/CreateIdeogram.html Circular Visualization in R http://zu...e/eval-documentation.pdf OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensi...2204 days ago
Bioinformatics tools for genome assembly !
...or low memory consumption, suitable for small and medium-sized genomes. Unicycler: A hybrid assembler that combines short and long reads for circular bacterial genome assembly....248 days ago
Release Notes for Genome Workbench 2.10.5
...rmat ((Tutorial)) Tree View: implemented new export mode based on selections (tutorial coming) Tree View: added support for distance based circular trees Tree View: new rooting...2877 days ago
JRF/SRF at University of Calcutta
...eering and Biotechnology, University College of Science, 35 Ballygunge Circular Road, Kolkata 700019 on the 1...ering and Biotechnology University College of Science 35, Ballygunge Circular Road Kolkata 700019 Adver...3436 days ago
Perl script to extract fasta sequence by matching name/ids !!
...or die; while () { trim($_); s/>//g; my ($id) = split (/\n/, $_); #my @i=split (/\s/, $id); # To avoid >flattened_line_10751 circular cases print OUT ">$_" if...2837 days ago
CGView - Circular Genome Viewer
GView is a Java package used to display and navigate bacterial genomes. GView is useful for producing high-quality genome maps for use in publications and websites, or as a visualization tool in a sequence annotation pipeline. Users can interact with the genome using a powerful pan-and-zoom inter...Tags: Bioinformatics, CGView, Circular, Genome, Viewer
2747 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is available at: http://sourceforge.net/projects/brig If you have any questions or comments, post t...Tags: Bioinformatics, BLAST, Circular, Genome, Viewer, Ring
2736 days ago
Comment on "Sibelia: A comparative genomics tool"
...as described in section "Coordinates file". "Circos" visualization ---------------------- You can visualize synteny blocks with a colorful circular diagram by using the "Circos...1247 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...on but only if param -g is not 0. If -g is 0, the value of this parameter is set to 1/5 of maximum number of regions. [0] -C, --circular - Reference sequence is a circular genome. [false] -F, --ambigui...2254 days ago