Results for "Classification"

Blogs

Bookmarks

  • Kraken: ultrafast metagenomic sequence classification using exact alignments

    ...faster abundance estimation programs, which only classify small subsets of metagenomic data. Using exact alignment of k-mers, Kraken achieves classification accuracy comparable to the fa...

    2832 days ago

  • Kaiju

    Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequ...y other protein database without taxonomic classification, using either protein or nucl...et al. (2016) Fast and sensitive taxonomic classification for metagenomics with Kaiju....

    2832 days ago

  • +24 more Bookmarks

Pages

Top-level pages

  • Bioinformatics Definitions

    ...structure alignment, phylogenetic tree construction, prediction and classification of protein structure, predict...s from the pairwise differences between sequences: for example, the classification with 70S, 30S RNAs establishe...

    3910 days ago

  • Data Mining in Bioinformatics

    ...deep end. Data mining commonly involves four classes of tasks: Classification - Arranges the data into pred...ms include decision tree learning, nearest neighbor, naive Bayesian classification and neural networks. Cluster...

    3909 days ago

  • +7 more Top-level pages

Wire posts

  • Classification of Proteins (CLAP)-http://nslab.mbu.iisc.ernet.in/clap/index.html #protein

    3463 days ago

  • Genomic signature: characterization and classification of species assessed by chaos game representation of sequences. http://www.ncbi.nlm.nih.gov/pubmed/10563018/ #ChaosGame #Genome #Signature

    3417 days ago

  • +2 more Wire posts

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Opportunity posts

ResearchLabs posts

  • BIGRE Lab

    ...e analysis of genome, transcriptome, proteome and metabolism. Our main activities include Analysis of regulatory sequences (RSAT project) Classification and analysis of mobile geneti...

    3785 days ago

Tags

  • Kraken: ultrafast metagenomic sequence classification using exact alignments

    Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have been relatively slow and computationally expensive, forcing researchers to use faster abundance estimation programs, which only classify sm...

    Tags: Bioinformatics, Kraken, Metagenomic, Sequence, Classification, Alignments, NGS

    2832 days ago

  • Kaiju

    Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is directly assigned to a taxon within the NCBI taxonomy by comparing it to a reference database containing microbial and viral protein sequences. By default, Kaiju uses either the avai...

    Tags: Bioinformatics, Kaiju, Metagenomic, Sequence, Classification, Alignments, NGS

    2832 days ago

  • +12 more Tags

Comments

  • Comment on "Tools for RNA classification"

    ...veral tools available for RNA classification, each with its own strengths...nal is a popular tool for RNA classification that uses a covariance model...omprehensive resource for RNA classification. RNAcode: RNAcode is a m...to achieve the best possible classification of RNA sequences....

    384 days ago

  • Comment on "Coronavirus Resources !"

    The US government SARS-CoV-2 Interagency Group (SIG) developed a Variant Classification scheme that defines three classes of SARS-CoV-2 variants: Variant of Interest Varia...

    924 days ago

  • +3 more Comments