BOL: Results for "Clean"

Results for "Clean"

- Jit@jit.aber
Installing Perl GD Module
...ldn’t get GD::Graph to build and I guessed this was because of some left over files from the failed build. I don’t know the command to clean things up inside the CPAN she...
3930 days ago
- Jit@jit.aber
The DNA of a Successful Bioinformatician decoded !!!
...le!" I think there is a lot truth in that statement. If we do not care about quality, timelines, good team culture, respectful communication (!!), clean code, if all this doesn&rsquo...
3697 days ago
+3 more Blogs

- Jit@jit.aber
mojolicious: a next generation web framework for the Perl programming language.
...pre-forking and hot deployment, perfect for building highly scalable web services. JSON and HTML/XML parser with CSS selector support. Very clean, portable and object-oriented...
2294 days ago
- Jit@jit.aber
CroCo: A program to detect potential cross contaminations in HTS assembled transcriptomes using expression level quantification
...used to estimate expression level (default is RapMap).This information is then used to categorize each transcript in the following 5 categories : clean: the transcript origin is fro...
1934 days ago
+3 more Bookmarks

- Jit@jit.aber
Clean the FASTA file
Mostly FASTA file contain NNN characters, which can be replace by random A T G C character with this perl script. It also print the FASTA sequence name, N's counts, nucleotide count and percentage details at command prompt/standard output.
3856 days ago

- Surabhi Chaudhary@surabhi
Commercial and public next-gen-seq (NGS) software
...b.is library and a set of script targeted to NGS. There are modules to: clean sequences (sanger, 454, ilumina), parse caf, ace and bowtie map files, clean and filter contigs, look for...
3509 days ago
- Poonam Mahapatra@poonam
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...bsplit.sh in=reads.fq ref=ecoli.fa,salmonella.fa basename=out_%.fq outu=clean.fq int=tThis will produce 3 o...out_ecoli.fq (ecoli reads)out_salmonella.fq (salmonella reads)clean.fq (unmapped reads)In th...
2304 days ago

- Jit@jit.aber
The clean R graphs http://shinyapps.org/apps/RGraphCompendium/index.php #R #Graphs #Clean #Plot
2794 days ago
- Jit@jit.aber
To clean up a fasta file so only first column of the header is outputted:$ awk '{print $1}' file.fa > output.fa #Sed #Clean #Header #Fasta
2561 days ago
+2 more Wire posts

- Jitendra Prajapati@jprajapati81
Bioinformatics Jokes !!
...are cool? A: Because they are scripted!! Why they talk $ unzip; strip; touch; finger; grep; mount; fsck; more; yes; fsck; fsck; umount; clean; sleep; A: Ah, Ohhh, dude, t...
3170 days ago

- BioQueen@bioqueen
Install ATOM editor on Elemantory OS / Ubuntu
...n-Lenovo-ideapad-320-15ISK:~/Downloads/$ apm apm - Atom Package Manager powered by https://atom.io Usage: apm where is one of: ci, clean, config, dedupe, deinstall, d...
1166 days ago
- Jit@jit.aber
Installing Porechop on Ubuntu !
...y -> build/lib/porechop copying porechop/adapters.py -> build/lib/porechop copying porechop/__init__.py -> build/lib/porechop Cleaning previous compilation: make clean rm -f porechop/src/adapter_a...
2096 days ago
+5 more Bio-Scripts

- Jitendra Narayan@admin
Tryst with a Bioinformatician # Dr Altan Kara
...ed for effective methods to eliminate the manipulated data and reach to clean/useful information. As days p...ts and information that exist in the literature and provide trustworthy clean information/datasets for rese...
2352 days ago

- Neelam Jha@neelam
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...s and the assembly. Make sure that you use the flags for canonical hashes for both sequence 1 and 2, as well as 8 threads. Finally, clean up you working directory by r...
1327 days ago
- biogeek@biogeek
Comment on "Install snakemake and activate on conda"
conda clean --all
1528 days ago
+1 more Comments