Commercial and public next-gen-seq (NGS) software
...b.is library and a set of script targeted to NGS. There are modules to: clean sequences (sanger, 454, ilumina), parse caf, ace and bowtie map files, clean and filter contigs, look for...3481 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...bsplit.sh in=reads.fq ref=ecoli.fa,salmonella.fa basename=out_%.fq outu=clean.fq int=tThis will produce 3 o...out_ecoli.fq (ecoli reads)out_salmonella.fq (salmonella reads)clean.fq (unmapped reads)In th...2277 days ago