BOL: Results for "Clean"

Results for "Clean"

- Jit@jit.aber
Clean the FASTA file
Mostly FASTA file contain NNN characters, which can be replace by random A T G C character with this perl script. It also print the FASTA sequence name, N's counts, nucleotide count and percentage details at command prompt/standard output.
Tags: Fasta, Clean, Perl, NNN charaters
3856 days ago
- Jit@jit.aber
The clean R graphs http://shinyapps.org/apps/RGraphCompendium/index.php #R #Graphs #Clean #Plot
Tags: R, Graphs, Clean, Plot
2794 days ago
- Jit@jit.aber
To clean up a fasta file so only first column of the header is outputted:$ awk '{print $1}' file.fa > output.fa #Sed #Clean #Header #Fasta
Tags: Sed, Clean, Header, Fasta
2561 days ago
- Jit@jit.aber
Nanopore adaptor !
Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively f...
Tags: Nanopore, adapters, Porechop, Clean, ONT
1543 days ago
- Jit@jit.aber
awk 'BEGIN {RS = ">" ; FS = "\n" ; ORS = ""} {if ($2) print ">"$0}' all_p_ctg.fa > all_p_ctg_CORRECTED.fa #remove #empty #clean #fasta
Tags: remove, empty, clean, fasta
2324 days ago
- Rahul Nayak@rahul
One liner to remove the description information from a fasta file and just keep the identifier $ perl -p -i -e 's/>(.+?) .+/>$1/g' sample1.fa #clean #header #fasta
Tags: clean, header, fasta
1900 days ago