Results for "Cluster"
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A simple tutorial for a complex ComplexHeatmap
...ory. install and load required packages require(RColorBrewer) require(ComplexHeatmap) require(circlize) require(digest) require(cluster) If all load successfully,...1110 days ago
- ...method, Centurion, that jointly infers the locations of all centromeres in a single yeast genome by exploiting the centromeres’ tendency to cluster in 3D space. We first demonst...
2986 days ago
RNA-Seq De novo Assembly Using Trinity
...anscripts for a dominant isoform, but then reports just the unique portions of alternatively spliced transcripts. Chrysalis clusters the Inchworm contigs into clusters and constructs complete de B...2946 days ago
- ...ads, map them flexibly to several reference genomes using one of four different mappers, create differential gene (miRNA) expression profiles and cluster reads using one of several al...
2751 days ago
- ...ment 150GB+ of memory on at least one machine when aligning mammal-sized genomes; less memory is needed for smaller genomes. Parasol or SGE for cluster support. 750M disk space...
2646 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
...a program that scaffolds and completes draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing cluster as well as on a laptop comput...2520 days ago
- RAMI, which clusters related nodes in a phylogenetic tree based on the patristic distance. RAMI also produces indices of cluster properties and other indices...
2444 days ago
orthodotter: Synteny plots (oxford grid)
...uments. To launch the clustering of dots, use extra-option...number of genes in a cluster to be valid. -o <f...e -o Vigne_vs_Banane.png > Vigne_vs_Banane.clusters ---------------------------...2442 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...to install, cost-effective, takes full advantage of multi-core processors and uses a small RAM footprint, Ready to be used on desktop computer, cluster, cloud as well as within dist...2328 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ fo...2217 days ago
