2910 days ago
List of bioinformatics workflow management tools !
...scribing analysis workflows and tools that are portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and high performance...1126 days ago
List of gene ontology software and tools
...I (Department of Pathology, UT Southwestern Medical Center) CLASSIFI (Cluster Assignment for Biological Inf...nce) is a data-mining tool that can be used to identify significant co-clustering of genes with similar func...3694 days ago
A simple tutorial for a complex ComplexHeatmap
...ory. install and load required packages require(RColorBrewer) require(ComplexHeatmap) require(circlize) require(digest) require(cluster) If all load successfully,...1113 days ago
2989 days ago
Genome Assembly Tools and Software - PART2 !!
...nome, correcting sequencing errors by locally clustering reads in small windows of...es some of the ideas introduced by Phusion on clustering treecat – Phylogene...ulti-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its...2670 days ago
Awesome perl frameworks, libraries and software - PART 3
...ration) of procedures including t-test, linear regression, and k-means clustering. CPAN-API/metacpan-client...o-pdf/(e)book toolchain happiness and sustainable productivity. duncs/clusterssh - Cluster SSH - Clust...2478 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ome in less than 6 days using 54 Gb of RAM and a 123-processor compute cluster for calculation of an FM-inde...2011. Full Text, Home Page Rainbow: an integrated tool for efficient clustering and assembling RAD-seq rea...3763 days ago
List of In-silico Binding Site Prediction Tools
...anchor residues, but hot regions, defined by clusters of residues, at the interfac...onservation, are available to screen and sort clusters of residues. PocketQuery was...with depth factors followed by a depth based clustering that uses neighbourhood in...3728 days ago
3814 days ago
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 laboratories of the Paris-Saclay Scientific Cluster, is seeking a bioinformatician to analyze Next Gen...3933 days ago
Complex Systems: From Physics to Biology October 15-16 2013 at JNU Convention Center
...In particular, applications of the concepts of physics to biological sciences will be the major theme of this meeting. Selected Topics: Cluster Dynamics Non-equilibrium...3861 days ago
3894 days ago
Bioinformatics -- Understanding of living systems through information science
...e genomes, by comparing them with those of other organisms. The Sakakibara Lab uses a next-generation sequencer at Keio University, along with a cluster machine with hundreds of CPUs...3901 days ago
2083 days ago
2059 days ago
Tags: Bioinformatics, Server, Cluster, Batch, SLURM, Tutorial
2907 days ago
Tags: Bioinformatics, SLURM, Job, Server, Run, Cluster, Basics
2898 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...ngth of SV. [10000] -v --ovlp-rat [FLOAT] Minimum overlapping ratio to cluster two skeletons or alignment re...-s --max-skel [INT] Maximum number of skeletons that are reserved in a cluster. [10] -R --max-reg [INT] Maxi...2107 days ago
2159 days ago