Results for "Clustering"
Users
Brief description: Currently, I'm pursuing a PhD at Bioinformatics Centre, University of Pune, Pune, India. I have developed an algorithm for alignment-free sequence analysis with its applications in molecular phylogeny, clustering and sero/genotyping .2906 days ago
Blogs
List of gene ontology software and tools
...ce) is a data-mining tool that can be used to identify significant co-clustering of genes with similar functio...alysis to determine if any statistically significant gene ontology co-clustering has occurred. http://pathcur...3691 days ago
List of comparative genomics resources !
...ve online poster presentation on the Macaque genome, including high-quality images, video clips, and Web resources The TIGR Gene Indices -- clustering and assembling EST and known...658 days ago
Bookmarks
Bioinformatics Algorithm Demonstrations and Tutorials
...trated include two approaches to approximate string matching (dynamic programming and Shift-AND numeric approximate matching), Hierarchical Clustering (used in phylogenetic studies...3685 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...ding, alternative splicing, EST analysis and comparative genomics. Sequence analysis: Multiple sequence alignment, sequence search and clustering, function prediction, motif d...3480 days ago
- +28 more Bookmarks
Pages
Bio++ : C Language libraries for your biological need
...he bacterial phylogeny problem. Syst Biol. 2007 Aug;56(4):633-42.Dutheil J, Galtier N. Detecting groups of coevolving positions in a molecule: a clustering approach. BMC Evol Biol. 2007...3928 days ago
Genome Assembly Tools and Software - PART2 !!
...reads to a reference genome, correcting sequencing errors by locally clustering reads in small windows of the...rsion of RePS incorporates some of the ideas introduced by Phusion on clustering treecat – Phylogenetic...2666 days ago
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Top-level pages
- ...nstruction, prediction and classification of protein structure, prediction of RNA structure, prediction of protein function, and expression data clustering. Algorithmic development is a...
3928 days ago
- ...l as legitimate or spam. Common algorithms include decision tree learning, nearest neighbor, naive Bayesian classification and neural networks. Clustering - Is like classification but...
3927 days ago
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Wire posts
News
R package for visualising GO enrichment
...hem together with figures of experimental data. This allows us to draw informative summary plots for analyses such as differential expression or clustering, where for each gene list we...3921 days ago
- ...esign features to generate massive throughput. Patterned flow cells, which contain billions of nanowells at fixed locations, combined with a new clustering chemistry deliver a significa...
3743 days ago
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Opportunity posts
Postodoc in Computational/Systems Biology and Machine Learning
...re: 1. In-depth understanding and implementation of methods and development of algorithms for statistical and machine learning classification, clustering, predictive modelling. 2. E...3659 days ago
- ...5. RNA-seq. Analysis 6. Differential expression testing involving Normalization, Statistical testing, heat map generation & hierarchical clustering 7. Annotating the assembled...
3624 days ago
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Bio-Scripts
- ...----------- -------------- Trinity Phase 1: Clustering of RNA-Seq Reads -----------...ysalis ------------------------- -- (Contig Clustering & de Bruijn Graph Constructio...inityrnaseq-Trinity-v2.6.6/Chrysalis/BubbleUpClustering -i /home/urbe/Tools/trinityrn...
2108 days ago
Set up WGD environment using conda !
...ssage and exit. Commands: dmd All-vs.-all diamond blastp + MCL clustering. kde Fit a KDE to a Ks di...ksd Ks distribution construction. mcl All-vs.-all blastp + MCL clustering. mix Mixture modeling of...1184 days ago
- +1 more Bio-Scripts
Tags
R package for visualising GO enrichment
An R package that visualizes the GO enrichment results as word clouds and arranges them together with figures of experimental data. This allows us to draw informative summary plots for analyses such as differential expression or clustering, where for each gene list we display its behaviour in the...Tags: R, GO, Gene Enrichments, Clustering, GO annotation, CRAN
3921 days ago
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Comments
Comment on "List of gene ontology software and tools"
GeneSCF serves as command line tool for clustering list of genes based on functional annotation (Geneontology, KEGG, REACTOME and NCG). This tool requires gene list in the form of Entrez Gene IDs or Official gene symbols as a input. http://genescf.kandurilab.org/1473 days ago
- Gene Set Clustering based on Functional annotation (GeneSCF) ---------------------- 13/01/2017 --------------------------- Due to recent changes (naming convention...
2642 days ago
- +4 more Comments
