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Results for "Command"

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  • Jitendra Narayan

    Monitor running jobs on Linux server

    You as a bioinformatican run lots of program on your servers. Sometime the shared server is also used by your colleague. If server is busy you sometime need to check the running programs and want to monitor the running programs as well. The "top" command will come in handy when you need to find o...

    Tags: Bioinformatics, Computational Biology, Linux, Command, Top, Running, Processes, Server, Monitor

    3609 days ago

  • Rahul Nayak

    Search Shell Command History

    We use couple of hundreads of command in daily basis. Most of them are actually repeated several time. The question remain open how do I search old command history under bash shell and modify or reuse it? Now a days almost all modern shell allows you to search command history if enabled by user. ...

    Tags: Bioinformatics, Computational Biology, Linux, History, Search, Find, Delete, Shell, Command

    3603 days ago

  • Rahul Nayak

    Want to Moves Your Home Directory to a Black Hole then only use this command mv ~ /dev/null #Command #Linux #Script #Move #Blackhole

    Tags: Command, Linux, Script, Move, Blackhole

    3154 days ago

  • Jit

    Print each command before executing? Bash script to print each command before executing. $ bash -x myscript.sh #Print #Command #Bash

    Tags: Print, Command, Bash

    2461 days ago

  • Neelam Jha

    Finally, a command line shell for the 90s https://fishshell.com/ #Shell #Command #Linux #FishShell

    Tags: Shell, Command, Linux, FishShell

    1171 days ago

  • Jit

    Frequent Paired-end reads (PE 2x100) mapping command lines

    bowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ && bwa sampe hs37m r1.sai r2.sai r1.fq r2.fq > r12.bwa.sam bwa bwasw ../index/bwa/hs37m.fa r12.fq > r12.bwasw.sam ...

    Tags: Frequent, Paired-end, reads, (PE 2x100), mapping, command, lines

    2171 days ago

  • Jit

    #tBLASTn #command line $ tblastn -query Avaga.pep.out.45.fa -db myDB -outfmt 6 -out output_file -evalue 1e-5 -max_target_seqs 1 #Blast #Protein

    Tags: tBLASTn, command, Blast, Protein

    2127 days ago

  • Neelam Jha

    ASCIIGenome: genome browser based on command line interface and designed for running from console terminals.

    ASCIIGenome is a genome browser based on command line interface and designed for running from console terminals. Since ASCIIGenome does not require a graphical interface it is particularly useful for quickly visualizing genomic data on remote servers while offering flexibility sim...

    Tags: ASCIIGenome, genome, browser, command, line, interface, designed, running, console, terminals.

    1992 days ago

  • BioStar

    Gooey: Turn (almost) any Python command line program into a full GUI application with one line

    Turn (almost) any Python command line program into a full GUI application with one line The easiest way to install Gooey is via pip pip install Gooey Alternatively, you can install Gooey by cloning the project to your local directory git clone https://github.com/chriskiehl/Gooey.git ...

    Tags: Python, command, line, program, GUI, application, oneline

    1636 days ago

  • Jit

    tinycov: standalone command line utility written in python to plot coverage from a BAM file

    Tinycov is a small standalone command line utility written in python to plot the coverage of a BAM file quickly. This software was inspired by Matt Edwards' genome coverage plotter. To install the stable version: pip3 install --user tinycov To install the development version: git clo...

    Tags: tinycov, standalone, command, line, utility, written, python, plot, coverage, BAM, file

    1493 days ago

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