Results for "Command lines"
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Taverna Workflow Management System
Taverna is an open source domain independent Workflow Management System – a suite of tools used to design and...r (which allows remote execution of workflows). Taverna is also available as a Comma...3904 days ago
- ...CuffDiff* EdgeR* DESeq2 Advanced Command Line Tutorial Graphical O...th CummeRbund introduces some basic commands using the cummeRbund package...likely variants in VCF format Pipelines are for those who are comfortable with using the UNIX command line; and often allow more...
3642 days ago
Ten recommendations for creating usable bioinformatics command line software
Bioinformatics software varies greatly in quality. In terms of usability, the command line interface is the first experience a user will have of a tool....t time a tool will be used. Here I present ten recommendations for comma...3607 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalone command-line use on various supported Linux and UNIX platforms. To dete...rmine which set of binaries to download, type "uname -a" on the comma...2988 days ago
- Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined i...
2917 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for N...en to manipulate NGS data as compared to the other command line tools such as grep, sed, perl etc. Furthermore, having a comma...2863 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, wh...
2856 days ago
VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The comma...2616 days ago
- Watch out: only a few files are counted in coverage statistics. Full documentation on&...for viral metagenomics. virmet is called with a command subcommand syntax: virmet fetch --v...m A short help is obtained with virmet subcomma...
2753 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of intercon...terminal window. Functions take search terms from command-line arguments. Individual op...tions. Queries can move seamlessly between EDirect comma...2744 days ago
