Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-...cs 11(Suppl 12):S1, 2010 Full Text Links to Linux command-line tutorials and resources...rial Greg Goebel's awk tutorial Executing an awk comma...3742 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CASTp : http://sts.bioengr.uic.edu/ca.... It was developed in the C programming language and is currently available as comma...3706 days ago
Perl one-liner for bioinformatician !!!
...nging line spacing, numbering lines, doing calculations, converting...="\n"x4' #Expand single blank lines into 4 consecutive blank line...s|\n|\r\n|' #Convert unix new lines into DOS new lines:perl -pe '...wize.wordpress.com/2012/06/15/command-line-magic-for-your-gene-an...3590 days ago
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Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that a...teractions, COSMIC mutations, and CNV data for cell lines. Does not require a network...hments. Examine the status of genes in common cell lines. A subset of COSMIC containin...3504 days ago
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List of Bioinformatics Software Tools for Next Generation Sequencing
...SRA and other NCBI resources; command-line or via web, can fetch da...s faster than alternative pipelines Annotates genomic data with al...are, or download analysis pipelines for automated and repeatable an...glfMultiples Description: command-line, variant caller Input:...2871 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that m...se.DNA TransposonsRetrovirus RetrotransposonsNon-Retrovirus Retrotransposons ( LINES ) Currently up to 50% of the...2173 days ago
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Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation GeneSCF serves as command line tool for clustering the...1.1 and above) by accessing source databases. With comma...2834 days ago