Results for "Comparative Genomes"
Blogs
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analyse gigantic biological data. Bei...cal programmer learn Perl's regular expression when they started a project on compara...3940 days ago
- In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research...igned to provide a visual means for simultaneously comparing genomes of multiple amniote species....
3929 days ago
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Bookmarks
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days,...hms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein se...
3934 days ago
Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3891 days ago
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Files
- 1000 Genomes data tutorial at ASHG Structural variants presentation by Jan Korbel European Molecular Biology Laboratory (EMBL) Heidelberg Genome Biology Research Unit Reference: https://www.genome.gov/pages/research/der/1000genomesprojecttutorials/structuralvariants-jankorbel.pdf
2787 days ago
- COMPARATIVE MICROBIAL GENOMICS ANALYSIS WORKSHOP @ cbs.dtu.dk Free Bioinformatics workbench https://www.mn.uio.no/ifi/english/research/networks/clsi/earlier_seminars/2012/tammivesth_osloseminarfinal.pdf
2072 days ago
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Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3934 days ago
- I found several angry bioinformatician writting a lot of criticism on Ruby and BioRuby. They also did compara...
3907 days ago
Pages
Keep Your Important SSH Session Running when You Disconnect from Server !!!
As a Bioinformatician/ Computational biologist we swim in the ocean of genomic/proteomics data, and play with them with an ease. In our day to day simulation, analysis, compara...3693 days ago
Genome Assembly Tools and Software - PART2 !!
...reported for the assembly of genomes while the others are designed aiming at handling complex genomes. RMAP 2.1 – Short-read M...HapCompass for polyploid genomes can currently be used to create a...AssemblerYASRA performs comparative assembly of short reads u...2675 days ago
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Top-level pages
- ...xtensive electronic databases on genomes and protein sequences, and techni...ation in the comparison of whole genomes. Several methods detect glyco...rces of deseases. Many complete genomes of microorganisms and a few o...in is known (homology modelling, comparative modelling). A homology mo...
3937 days ago
- Genomics is the study of the genomes of organisms. The field includes i...first sequenced the complete genomes of a virus and a mitochondrion. H...Database Guide: A Web-Based Comparative Genomics Tutorial for Inv...m for rapidly aligning entire genomes, whether in complete or draft...
3932 days ago
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Wire posts
News
100K Foodborne Pathogen Genome Project
The 100K Genome Project, led by the University of California, Davis, the U.S. F...otechnology Information. 100K Genome Project, aims to sequence the genomes of 100,000 bacterial and viral genomes. http://100kgenome.vetmed.uc...3913 days ago
- PhylomeDB is a public database for complete collections of gene phylogenies (ph...aims at providing a high-quality phylogenetic analysis of different genomes , including Maximum Likelihoo...
3908 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climat...riants, of the comparison of multiple and diverse genomes of a same species and of the construction of pan- and core-genomes. These challenging tasks will...3938 days ago
- van Noort Group is looking for PhD fellows We currently access an unprecedented knowle...llenge in the project will be to identify which of the many variants in these genomes have functional effects. Then...
3938 days ago
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ResearchLabs posts
- ...rea: Analysis of Next Generation sequence data in cancer Methods for analysis of structural variation in cancer genomes Next Generation sequencing in malaria Computational comparative genomics Sensitive genom...
3937 days ago
BC Cancer Agency Genome Sciences Centre
Research Area Genome analysis, genome visualization, mutation detection, molecular docking, comparative genomics, cancer informatics Link @ http://www.bcgsc.ca3937 days ago
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Fun
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatician wo....0 The glass is neither half-full nor half-empty: it's actually have several genomes. I'm BioGeek. Fedup with LI...3710 days ago
Video
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to...t of as words. Q. We're coming to understand the genomes of various organisms - not ju...used to analyze a genome is comparing it with the genomes of other organisms, to see wh...3906 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
Translational Bioinformatics: Transforming 300 Billion Points of Data into Diagnostics, T...of disease in type 2 diabetes, and evaluating patients presenting with whole genomes sequenced. The NIH Wednesda...3900 days ago
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Bio-Scripts
Download the genome from NCBI using bash script/command
...l 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/assembly_summary...s|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...l 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary...s|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...2522 days ago
Download the gff files from NCBI using bash script/command
...l 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/assembly_summary...s|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...l 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary...s|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...2513 days ago
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Groups
...array data Compendia of microarrays CGH (Comparative Genomic Hybridization) microa...gorithms to speed up the assembly procedure Comparative genomics approaches in genome...y Genomics Evolutions and their impact on genomes EvolveG EBAnalyser Bio...3933 days ago
This group is being designed to cover some of the common algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein se...3891 days ago
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Tags
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a collection of contiguous genes located on the same chromosome. These block regions have mostly been preserved by genome rearrangements, and so synteny blocks from two related species (e.g., humans and mice) will ...Tags: Synteny, Genome, GWAS, Conserve Synteny, Synteny Blocks, Comparative Genomes, Syntenic Regions
2600 days ago
Comments
Comment on "Comparative genomics educational material and papers bookmarks"
A comparative analysis of the genomes of Drosophila melanogaster, Caenorhabditis elegans, and Saccharomyces cerevisiae—and the proteins they are predicted to encode—was un...2723 days ago
