Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analyse gigantic biological data. Bei...cal programmer learn Perl's regular expression when they started a project on compara...3940 days ago
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Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3891 days ago
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Keep Your Important SSH Session Running when You Disconnect from Server !!!
As a Bioinformatician/ Computational biologist we swim in the ocean of genomic/proteomics data, and play with them with an ease. In our day to day simulation, analysis, compara...3693 days ago
Genome Assembly Tools and Software - PART2 !!
...reported for the assembly of genomes while the others are designed aiming at handling complex genomes. RMAP 2.1 – Short-read M...HapCompass for polyploid genomes can currently be used to create a...AssemblerYASRA performs comparative assembly of short reads u...2675 days ago
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100K Foodborne Pathogen Genome Project
The 100K Genome Project, led by the University of California, Davis, the U.S. F...otechnology Information. 100K Genome Project, aims to sequence the genomes of 100,000 bacterial and viral genomes. http://100kgenome.vetmed.uc...3912 days ago
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Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climat...riants, of the comparison of multiple and diverse genomes of a same species and of the construction of pan- and core-genomes. These challenging tasks will...3938 days ago
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BC Cancer Agency Genome Sciences Centre
Research Area Genome analysis, genome visualization, mutation detection, molecular docking, comparative genomics, cancer informatics Link @ http://www.bcgsc.ca3937 days ago
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatician wo....0 The glass is neither half-full nor half-empty: it's actually have several genomes. I'm BioGeek. Fedup with LI...3710 days ago
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to...t of as words. Q. We're coming to understand the genomes of various organisms - not ju...used to analyze a genome is comparing it with the genomes of other organisms, to see wh...3906 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
Translational Bioinformatics: Transforming 300 Billion Points of Data into Diagnostics, T...of disease in type 2 diabetes, and evaluating patients presenting with whole genomes sequenced. The NIH Wednesda...3900 days ago
Download the genome from NCBI using bash script/command
...l 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/assembly_summary...s|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...l 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary...s|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...2521 days ago
Download the gff files from NCBI using bash script/command
...l 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/fungi/assembly_summary...s|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...l 'ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plant/assembly_summary...s|(ftp://ftp.ncbi.nlm.nih.gov/genomes/all/.+/)(GCF_.+)|\1\2/\2_geno...2512 days ago
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Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a collection of contiguous genes located on the same chromosome. These block regions have mostly been preserved by genome rearrangements, and so synteny blocks from two related species (e.g., humans and mice) will ...Tags: Synteny, Genome, GWAS, Conserve Synteny, Synteny Blocks, Comparative Genomes, Syntenic Regions
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Comment on "Comparative genomics educational material and papers bookmarks"
A comparative analysis of the genomes of Drosophila melanogaster, Caenorhabditis elegans, and Saccharomyces cerevisiae—and the proteins they are predicted to encode—was un...2723 days ago