Tags: Hiller, Lab, LOEWE-TBG, Frankfurt, ambitious, PostDoc, Comparative Genomics
1244 days ago
Tags: Etienne, GJ, Danchin, HGT, Genome, Bioinformatics, Comparative Genomics, French, France, Evolution, Adaptation
1226 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genomes Compare structural and functional annotations of proteins between sequenced genomes. ARED Organism -- expansion of ARED reveals AU-rich element cluster variations between human...Tags: comparative, Genomics, Resources, Tools, Server, Comparative Genomics
640 days ago
Tags: Bioinformatics, Comparative Genomics, Assembly, Jobs
631 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly important. Using the power of the human visual system to detect trends and spot outliers is necessary in such large and complex data sets. More at http:/...Tags: Bioinformatics, NGS, Visualization, Chromosome, Comparative genomics
2894 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order and orientation of features, such as protein coding genes, non-coding genes, or neutral sequences. Satsuma does no...Tags: Bioinformatics, NGS, Sequence, Alignment, Synteny, Comparative genomics, Genomics
2877 days ago
Tags: Bioinformatics, Musrsaki, Plot, Synteny, Genome, Viewer, Comparative genomics
2737 days ago
Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filtering criteria, 192 pig-specific evolutionary breakpoint regions (EBRs) were located. The number of porcine EBRs is c...Tags: Bioinformatics, Comparative genomics, Genomics, Chromosome, Synteny, Evolution
2697 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms enabled the automatic identification of orthologs for more than 90% of genes and intergenic regions across the four species despite the large number of duplicated genes in the yeast genome. The remaining a...Tags: Bioinformatics, Comparative genomics, Genomics, Chromosome, Analysis, Method, Evolution
2697 days ago
Tags: Bioinformatics, Comparative genomics, Genomics, Structure Variation, SV, NGS
2666 days ago