Results for "Compare"
Blogs
In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research I used Evolution Highway (RH) http://eh-dem...3924 days ago
BBTools for bioinformatician !
...).----------------------------------------------------------------- Compare mapped reads between two file...ata This does NOT require alignments so it should prove more useful compared to Picard MarkDuplicates. Re...2255 days ago
- +4 more Blogs
Bookmarks
- ...Galaxy Tutorial RNA-Seq (Advanced) Tutorial In this tutorial we compare the performance of three stat...torial Variant Detection (Advanced) Tutorial In this tutorial we compare the performance of three stat...
3637 days ago
- Explore genetic variation interactively. Compare entire cohorts in seconds with SQL-like queries. Compute transition/transversion ratios, genome-wide association, allelic frequenc...
3410 days ago
- +26 more Bookmarks
Files
Master Thesis: Trans-membrane topology prediction through Markov based decoders
...MM, correctly predicts the entire topology for 77% of the sequences in a standard dataset of 86 proteins with supervised topology. These results compare favorably with existing metho...3929 days ago
Evaluation of genome assembly software based on long reads
...tions in many species. Also, these new technologies have been used to fill in many of the gaps in the human reference genome. In this report, we compare and evaluate several genome a...1904 days ago
Pages
Awesome perl frameworks, libraries and software - PART 2
...ing contest control system kazuho/p5-Net-DNS-Lite - pure-perl DNS resolver with support for timeout japhb/perl6-bench - Benchmark and compare Perl 6 implementations agains...2479 days ago
Top-level pages
- ...e the DNA sequence into a protein sequence, searching all six frames; compare the DNA sequence to known pro...tness (or threading) approaches: the search sequence is systematically compared to all known protein structu...
3932 days ago
List of In-silico Binding Site Prediction Tools
...lar sites on protein surfaces by local surface structure alignment. It compares the query protein to members...ved, when the method was tested against a data-set of apo-proteins and compared with their respective ligand...3728 days ago
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Wire posts
Opportunity posts
Computational Biologist Scientist @ Strand Life Sciences
We are looking for a motivated application scientist to help evaluate, compare, and develop next generation sequencing (NGS) data analysis methods. The successful candidate should be...3689 days ago
Application Scientist in Strand LifeSciences Bangalore
Job Description We are looking for a motivated application scientist to help evaluate, compare, and develop next generation sequencing (NGS) data analysis methods. The successful can...3665 days ago
ResearchLabs posts
- In our lab, we seek to characterize and to compare genomes in order to better understand genetic and evolutionary processes linking genotypes to phenotypes. Sequencing and deco...
653 days ago
Bio-Scripts
- # Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe19
2249 days ago
- ...ng: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( numBytesWritten !...ng: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( WriteToSocket(req...
2083 days ago
- +3 more Bio-Scripts
Tags
Alignment of closely related whole genomes/scaffolds
With the relative ease and low cost of current generation sequencing technologies has led to a dramatic increase in the number of sequenced genomes for species across the tree of life. This increasing volume of data requires tools that can quickly compare multiple whole-genome sequences, millions...Tags: Whole genome, NGS, Genome, Scaffolds, pan-genome, Evolution, Alignments, Compare
3003 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate th...
Tags: LAST, Bioinformatics, Mapping, Match, Align, Sequences, Compare
2963 days ago
- +6 more Tags
Comments
Comment on "Benchmarking Perl Module !"
...a simple and standardized way to measure and compare the performance of Perl code....e per iteration. You can use these results to compare the performance of your Perl...enchmark module, and analyzing the results to compare the performance of the module...400 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...eny analysis: Choose the species: Select the species that you want to compare based on their evolutionary r...ed in specific lineages, and inferring the evolutionary history of the compared species. Validate the resul...408 days ago
- +2 more Comments
