Results for "Compare"
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Alignment of closely related whole genomes/scaffolds
With the relative ease and low cost of current generation sequencing technologies has led to a dramatic increase in the number of sequenced genomes for species across the tree of life. This increasing volume of data requires tools that can quickly compare multiple whole-genome sequences, millions...Tags: Whole genome, NGS, Genome, Scaffolds, pan-genome, Evolution, Alignments, Compare
3008 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate th...
Tags: LAST, Bioinformatics, Mapping, Match, Align, Sequences, Compare
2968 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to ...
Tags: Bioinformatics, Chromosome, Genome, NGS, Align, Compare, Similarity
2683 days ago
- pyScaf orders contigs from genome assemblies utilising several types of information: paired-end (PE) and/or mate-pair libraries (NGS-based mode) long reads (NGS-based mode) synteny to the genome of some related species (reference-based mode) Scaffolding In reference-based mode, pyS...
Tags: Bioinformatics, Chromosome, Genome, NGS, Align, Compare, Similarity, Scaffolding
2683 days ago
- CLgenomics is a standalone desktop software specifically designed for bacterial genome analysis. This program has a powerful multi-genome browser, which enables rapid and responsive exploration of bacterial genomes. To use CLgenomics, individual genome data (genome sequences + annotation details...
Tags: Bioinformatics, Analysis, Genome, Bacteria, Compare, CLgenomics
2609 days ago
- Perform Alignment-free k-tuple frequency comparisons from sequences. This can be in the form of two input files (e.g. a reference and a query) or a single file for pairwise comparisons to be made.
Tags: KAST, Alignment, K-tuple, Compare, Genome, Sequences
791 days ago
GEO2R: compare two or more groups of Samples
GEO2R to compare two or more groups of Samples in order to identify genes that are differentially expressed across experimental conditions.Tags: GEO2R, compare, groups, Samples, identify, genes, differentially, expressed, across, experimental, conditions
1221 days ago
