Tags: Bioinformatics, Computational Biology, Education, Tutorial, R, OpenCPU, Computing, API
3211 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology along with their genome coordinates. Using a scoring function which accounts for the distance between neighboring genes on eac...Tags: Bioinformatics, DAGchainer, Computing, Chains, Syntenic, Genes, Genomes
2618 days ago
DendroPy: a Python library for phylogenetic computing
DendroPy is a Python library for phylogenetic computing. It provides classes and functions for the simulation, processing, and manipulation of phylogenetic trees and character matrices, and supports the reading and writing of phylogenetic data in a range of formats, such as NEXUS, NEWICK, NeXML, ...Tags: DendroPy, Python, library, phylogenetic, computing
2189 days ago