Results for "Contamination"

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  • MetaBAT: An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities

    MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities Grouping large genomic fragments assembled from shotgun metagenomic sequences to deconvolute complex microbial communities, or metagenome binning, enables the study of individual organisms ...

    Tags: Bioinformatics, Analysis, Assembly, Genome, MetaBAT, MetaGenomics, Contamination

    317 days ago

  • COCACOLA (binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment, and paired-end read LinkAge)

    COCACOLA is a general framework that combines different types of information: sequence COmposition, CoverAge across multiple samples, CO-alignment to reference genomes and paired-end reads LinkAge to automatically bin contigs into OTUs. Furthermore, COCACOLA seamlessly embraces customized prior k...

    Tags: Bioinformatics, Analysis, Assembly, Genome, COCACOLA, MetaGenomics, Contamination

    316 days ago

  • Understanding Alien Index (AI) https://github.com/josephryan/alien_index #Alien @ Index #AlienIndex #AI #Contamination #Tool

    Tags: Alien, AlienIndex, AI, Contamination, Tool

    289 days ago

  • Decontamination https://img.jgi.doe.gov/er/doc/SingleCellDataDecontamination.pdf #Bacteria #Contamination

    Tags: Bacteria, Contamination

    256 days ago

  • Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence

    Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequences an important part of analysis pipelines. Here we use Taxoblast, a simple pipeline with a graphical user interface, for the post-assembly detection of contaminating sequences in ...

    Tags: Taxoblast, pipeline, identify, contamination, genomic, sequence

    55 days ago