Results for "Contig"
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Some of the useful bioinformatics scripts. For example ... contig-stats.pl is a Perl script that will automatically describe features of a sequence assembly. http://milkweedgenome.org/?q=scripts3350 days ago
- HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo ev...
1082 days ago
- ...visualization of assembled DNA sequence data ("contigs") derived from (often uninte...e, and taxonomic annotation for collections of contigs with a view to separating ou...nlikely to be of use on its own as it requires contig data to be supplied in a form...
2871 days ago
- ...st current assemblers and provides the user with great flexibility in choosing the scaffolding parameters. In particular, Bambus is able to accept contig linking data other than speci...
2808 days ago
BLAST Ring Image Generator (BRIG)
...rence sequence and other sequences as concentric rings. BRIG will perform all BLAST comparisons and file parsing automatically via a simple GUI. Contig boundaries and read coverage...2763 days ago
CISA: Contig Integrator for Sequence Assembly
...mploy various state-of-the-art assemblers to generate different sets of contigs for bacterial genomes. A too...SA, has been developed to integrate the assemblies into a hybrid set of contigs, resulting in assemblies of...2687 days ago
- ...caffolds from NGS data (reads and contigs). The tool is written in Pyt...e one needs to first map reads to contigs (instead of providing .sam f...s produced after mapping reads to contigs and the resulting scaffolds...p; -t) Bundle threshold. Pairs of contigs supported by number of read...
2689 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
...uality prokaryotic genome assembly and annotation can be obtained with ease. It performed better than de novo assemblers and contig integration software. Produces more contiguous assemblies, higher N50 va...2687 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...eGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic...of sequence (FASTA) files containing assembled contigs of any length in Multi-FASTA format to produce an improved contig set based on OLC based assemb...2683 days ago
- ...notate annotations.bed --out ideogram.pdf -or- Rscript Ideoplot.R --annotate annotations.bed Options --ideobed, i A bed file of reference contig lengths/chromosome names -...
2627 days ago
