Results for "Contig"


  • Whar are N50 and L50 of a contig assembly file? How to calculate it?

    I am currently dealing with new contig assembly dataset, and bit confused about N50 and L50 stuff ....

    Tags: NGS, N50, L50, Contig, Assembly, Genome

    716 days ago

  • Need help in Blastn?

    I am doing megablast of a contig against NR database, but unable to understand this -outfmt '6 qseqid staxids qstart qend sstart send qseq sseq evalue length' Can you please help me to undestand all these.

    Tags: Blastn, BLAST, Nucleotide, Alignment, Database, NR, Contig, NGS

    608 days ago


    SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offering the possibility to manually control the scaffolding process. By using the distance information of paired-end and/or matepair data, SSPACE is able to assess the order...

    Tags: Bioinformatics, SSPACE, Scaffolding, NGS, Genome, Contig

    289 days ago

  • CLA: Contig-Layout-Authenticator

    To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequencing, we developed Contig-Layout-Authenticator (CLA). The CLA pipeline can scaffold reference-sorted contigs based on paired reads, resulting in better assembled genomes. Moreover, CL...

    Tags: Bioinformatics, Analysis, Scaffolding, CLA, Contig

    289 days ago