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Results for "Contigs"

Wire posts

• • Aaryan Lokwani@aaryan

  

  Count the contigs length in index fasta file with samtools. $ awk '{s+=$2}END{print s}' scaffolds.fasta.fai #Fasta #Index #Length #Count #Size #Samtools

  2133 days ago

• • Jit@jit.aber

  

  Understanding N50 http://jermdemo.blogspot.be/2008/11/calculating-n50-from-velvet-output.html #N50 #Assembly #Genome #Contigs

  2784 days ago

• • Jit@jit.aber

  

  #Clustering metagenomic #contigs on #tetranucleotide frequency http://cgat.readthedocs.io/en/latest/recipes/metagenome_contigs_kmers.html

  2609 days ago

• • Jit@jit.aber

  

  #N50 = contig length so that half of the contigs are longer and 1/2 of contigs are shorter

  2168 days ago

• • Abhimanyu Singh@abhimanyu

  

  #SSPACE Basic, SSAKE-based #Scaffolding of Pre-Assembled Contigs after Extension https://github.com/nsoranzo/sspace_basic

  2031 days ago

• • Rahul Nayak@rahul

  

  ALLHiC: identify allelic contigs https://github.com/tangerzhang/ALLHiC/wiki/ALLHiC:-identify-allelic-contigs #AllHic #Scaffolding #3C #ALLHiC

  1889 days ago