BOL: Results for "Coordinates"

Results for "Coordinates"

- Shruti Paniwala@shruti
Blast script to index and extract sequence !!
...GCAGCTTCTGAACTG GTTACCTGCCGTGAGTAAATTAAAATTTTATTGACTTAGGTCACTAAATACTTTAACCAATATAGGCATAGCGCACAGAC .... # query the blast database by id and coordinates $ blastdbcmd -db EC -range 1...
2835 days ago
- Abhimanyu Singh@abhimanyu
Transpose the file coordinates and plot dendrogram in R
#Save this as tr.awk { for (i=1; i
2600 days ago
- Jit@jit.aber
Extract fasta sequence from a multifasta file with coordinates
#!/usr/bin/perl use Bio::DB::Fasta; #USAGE perl extractFASTAwithSIZE.pl finalSample_filtered.fa 0 1000 > aaaaaa.fa my $fastaFile = shift; my $querySizeST = shi...
2515 days ago
- Jit@jit.aber
Fastq-dump for SRA download
...r file specific name (ex: "chr1" or "1"). "from" and "to" are 1-based coordinates --matepair-distance Fil...
2109 days ago
- BioStar@biostar
Bash script to extract intronic fragments !
#To obtain introns, we simply need the gene and exonic coordinates; #by subtracting the exonic regions from the genic region, we have the intronic region. gunzip -c genome_file.gtf...
1349 days ago