Results for "Correction"
Blogs
Bioinformatics tools developed for Oxford Nanopore data analysis !
...l time analysis toolshttp://minotour.nottingham.ac.uk/ nanoCORRError-correction tool for nanopore sequence da...sequence datahttps://github.com/mitenjain/nanopore NanocorrectError-correction tool for nanopore sequence da...2306 days ago
CANU genome assembly parameters !
...tely of if we want to smash them together, we can alternate the error correction process. canu -p test_asmbl...rectedReads.fasta.gz : file containing the input sequences after correction, trim and split based on cons...1930 days ago
- +1 more Blogs
Bookmarks
- ...or raw sequence quality analysis and control with few of process for reporting reads quality statistical details, trimming, filtering, and error correction. Please bookmarks them for th...
3219 days ago
- ...onfig generates a configuration file that notably specifies the average insert size of the mate-pair library preprocess allows the detection and correction of chimerae, the estimation o...
2838 days ago
- +41 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...e system. AutoEditor 1.20 – Automated Correction of Genome Sequence ErrorsAuto...sequencing. It also provides tools for error correction, sequence-to-read alignment a...quencing reads. Quake adopts the k-mer error correction framework, first introduced b...2671 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...842, 2010. Publisher Website Data quality assessment, filtering, and correction SolexaQA: At-a-glance qualit...l [requires a reference sequence] Quake: quality-aware detection and correction of sequencing errors. Kelley...3764 days ago
Commercial and public next-gen-seq (NGS) software
...h Genome Sciences Centre. Perl/Linux. SOAPdenovo - Part of the SOAP suite. See above. VCAKE - De novo assembly of short reads with robust error correction. An improvement on early vers...3504 days ago
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Wire posts
News
- ...Gopinathan, IISER, Thiruvananthapurum] 7. Hybrid or hyper-GGA methods; beyond static DFT; Beyond LDA and GGA; Self-interaction correction; Dispersion corrected functio...
3815 days ago
Bio-Scripts
Tadpole is 250x faster than SPADes assembler !
...pole.sh in= out= mode=extend Correction: tadpole.sh in= out= mode=correct Extension and correction may be done simultaneously....r error- correction or extension. reads=-1...a window, halt correction in that direction. qualsum=8...961 days ago
Tags
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate, and is especially intended for PacBio reads. It uses a hybrid strategy, meaning that it uses two sets of reads: the reference read set, whose error rate is assumed to be small, and ...Tags: Bioinformatics, LoRDEC, Hybrid, Error, Correction, Program, Long, PacBio, Reads, Illumina
2567 days ago
Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome data. In addition to correcting substitution errors, we locate and correct insertion, deletion, and homopolymer err...Tags: Pollux, Platform, Independent, Error, Correction, Single, Mixed, Genomes
2528 days ago
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Comments
Comment on "Short-read assembly using Spades !"
...genome browser. SPAdes also provides several options for tuning the assembly parameters, such as adjusting the k-mer length or enabling error correction. The SPAdes manual provides d...406 days ago
Comment on "Sibelia: A comparative genomics tool"
..." will contain their coordinates, where N is the number of stage. Zero corresponds to blocks obtained without any simplification. Boundaries correction --------------------- Algor...1270 days ago
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