Comment on "Short-read assembly using Spades !"
...genome browser. SPAdes also provides several options for tuning the assembly parameters, such as adjusting the k-mer length or enabling error correction. The SPAdes manual provides d...411 days ago
Comment on "Sibelia: A comparative genomics tool"
..." will contain their coordinates, where N is the number of stage. Zero corresponds to blocks obtained without any simplification. Boundaries correction --------------------- Algor...1275 days ago
Comment on "SPAdes hybrid genome assembly"
use SPAdes to assemble the data. SPAdes is a swiss-army knife of genome assembly tools, and by default includes read correction. This takes up lots of RAM, so we are g...2164 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...(nanopore reads) Minimap and miniasm are ultrafast tools for (i) mapping and (ii) assembly. Designed for long, noisy reads, they do not have a correction or consensus step, and theref...2165 days ago