2431 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...-perl-perl - BioPerl core perl moduleslibbio-perl-run-perl - BioPerl wrappers: moduleslibbio-samtools-perl - Perl interface to SamTools library for DNA sequencinglibbiojava-java - J...3912 days ago
Five unique traits of effective computational biologist
...grammer learned it a year before because it looked interesting; and the great biological programmer also read about the BioPerl packages, genomics, DNA string, genomic theories, or...3912 days ago
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3912 days ago
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Does anyone have Nanopore latest updates?
...earch, personalised medicine, crop science, security/defence and more. The platform technology uses nanopores to analyse single molecules including DNA/RNA and proteins. With a broa...3775 days ago
3882 days ago
Bio++ : C Language libraries for your biological need
...language. Some of the unique features of the libraries are as follows:Sequence analysis Sequence and Site objects, with various Alphabet support (DNA, RNA, Proteins, Codons, any '...3910 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby project provid...3909 days ago
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3774 days ago
Prime Minister’s 100k Genome Project
...y a key role in building on the UK’s long track record as leader in medical science advances to push the boundaries by unlocking the power of DNA data. The UK will become the...3885 days ago
3911 days ago
Postdoctoral position in bioinformatics @ Sweden
...e are focused on methods development for and analysis of next generation DNA sequencing, in particular com...ce from analysis of large-scale data, in particular from next generation DNA sequencing, is highly valued....3910 days ago
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3870 days ago
Bioinformatics -- Understanding of living systems through information science
...ly, the progress of the Human Genome Project, aiming to decode all human DNA sequences, has highlighted a...mputers to analyze life. One is example is the genome. In all organisms, DNA contains genetic information,...3879 days ago
Python script to download covid genome !
..."complete": nm = x['accession'] print("downloading", nm) dna = Entrez.efetch(db='nucleotid...asta', retmode= 'text').read().split("\n")[1:] allseq[nm] = ''.join(dna) import json with open("d...1098 days ago
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Dynamic chromosome breakpoints !!!
Cell division involves the distribution of identical genetic material, DNA, to two daughters’ cells. During this process, duplicated deoxyribonucleic acid (DNA) goes through a condensation and decondensation process. This is followed by nuclear envelope dissolution, mitotic spindle assembly...Tags: Bioinformatics, Genome, Chromosome, Breaks, Breakpoints, EBRs, Recombination, Cross-over, Abnormalities, DNA
3515 days ago
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable diseases requires an approach that looks at all the variant bases and types in a genome. While a PacBio de novo assembly resolves the most novel SV variants. 8-10X PacBio coverage of single genomes or trios reveals triple the SVs ...Tags: Bioinformatics, LR, Long, Reads, Tools, Software, Pacbio, Genome, DNA, Sequence, NGS, SV, Variation, Structure
2570 days ago
Comment on "Tools for Sequence translation !"
...ence translation is the process of converting a DNA or RNA sequence into its corr...web-based tool that allows users to translate a DNA sequence into its correspondi...ic codes and provides functions for translating DNA or RNA sequences into protein...383 days ago
Comment on "China’s BGI says it can sequence a genome for just $100"
https://www.bloomberg.com/news/features/2019-11-13/chinese-genetics-giant-bgi-wants-to-tailor-medicine-to-your-dna1489 days ago